Z. japonica Nagirizaki
Zjn_sc00089.1.g00940.1.am.mk
Sequence
-
BLAST
| TAIR10 |
AT3G16857.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
203 |
6 |
86 |
3e-18 |
329.6 |
23.6 |
27.1 |
| Subject |
669 |
33 |
113 |
|
| Annot |
| Symbols: ARR1, RR1 | response regulator 1 | chr3:5756113-5758853 FORWARD LENGTH=669 |
| NR |
ref|XP_004967181.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
203 |
1 |
86 |
2e-20 |
334 |
25.6 |
33 |
| Subject |
678 |
1 |
88 |
|
| Annot |
PREDICTED: two-component response regulator ARR10-like [Setaria italica] |
| IRGSP |
Os02t0796500-03_chr02_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
203 |
4 |
86 |
2e-18 |
338.9 |
22.2 |
28.1 |
| Subject |
688 |
18 |
100 |
|
| Annot |
|
| Sbicolor |
Sobic.005G050700.1.p|Chr05|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
203 |
1 |
86 |
6e-22 |
341.9 |
24.6 |
31 |
| Subject |
694 |
1 |
88 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00089.1.g00940.1.am.mk |
length: 203 aa. |
| IPR001789 |
Signal transduction response regulator, receiver domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0000156 |
phosphorelay response regulator activity |
|
|
| Biological Process |
GO:0000160 |
phosphorelay signal transduction system |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| HMMPfam |
PF00072 |
Response_reg |
1.4e-05 |
12-86 |
| ProfileScan |
PS50110 |
RESPONSE_REGULATORY |
13.061 |
11-86 |
| IPR009057 |
Homeodomain-like |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Gene3D |
G3DSA:1.10.10.60 |
no description |
7.1e-06 |
100-125 |
| IPR011006 |
CheY-like superfamily |
| superfamily |
SSF52172 |
CheY-like |
2.1e-12 |
7-86 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.2300 |
no description |
1.3e-13 |
9-99 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 13 | 3556600 | 3560081 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00089.1 |
maker_non_over |
exon |
815014 |
815078 |
. |
- |
. |
ID=Zjn_sc00089.1.g00940.1.am.mk:exon:5 |
| Zjn_sc00089.1 |
maker_non_over |
exon |
815746 |
815928 |
. |
- |
. |
ID=Zjn_sc00089.1.g00940.1.am.mk:exon:4 |
| Zjn_sc00089.1 |
maker_non_over |
exon |
816922 |
817026 |
. |
- |
. |
ID=Zjn_sc00089.1.g00940.1.am.mk:exon:3 |
| Zjn_sc00089.1 |
maker_non_over |
exon |
818127 |
818279 |
. |
- |
. |
ID=Zjn_sc00089.1.g00940.1.am.mk:exon:2 |
| Zjn_sc00089.1 |
maker_non_over |
exon |
818390 |
818495 |
. |
- |
. |
ID=Zjn_sc00089.1.g00940.1.am.mk:exon:1 |