Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00089.1.g00120.1.am.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00089.1)

BLAST

TAIR10	AT5G57590.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	219	15	217	6e-36	380.4	41.1	57.1
		Subject	833	22	236
		Annot	\| Symbols: BIO1 \| adenosylmethionine-8-amino-7-oxononanoate transaminases \| chr5:23318593-23322687 REVERSE LENGTH=833
NR	ref\|XP_002468318.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	219	3	217	7e-72	376.7	70.3	77.2
		Subject	825	4	224
		Annot	hypothetical protein SORBIDRAFT_01g043690 [Sorghum bicolor] gi\|241922172\|gb\|EER95316.1\| hypothetical protein SORBIDRAFT_01g043690 [Sorghum bicolor]
IRGSP	Os08t0245400-01_chr08_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	219	2	217	3e-67	374.9	67.6	74
		Subject	821	1	220
		Annot
Sbicolor	Sobic.001G465700.1.p\|Chr01\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	219	3	217	9e-75	376.7	70.3	77.2
		Subject	825	4	224
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR027417	P-loop containing nucleoside triphosphate hydrolase
Zjn_sc00089.1.g00120.1.am.mk				length: 219 aa.
method	AccNumber	shortName	E-value	location
superfamily	SSF52540	P-loop	1.5e-09	30-217
no_ID
Gene3D	G3DSA:3.40.50.300	no description	1.1e-31	135-216
HMMPfam	PF13500	AAA_26	4.1e-27	31-215
Seg	seg	seg	NA	9-23 45-62

Pseudomolecule

Chromosome	Start	End	Strand
13	2845434	2846093	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00089.1	maker_non_over	exon	103848	104507	.	-	.	ID=Zjn_sc00089.1.g00120.1.am.mk:exon:1