Z. japonica Nagirizaki
Zjn_sc00089.1.g00090.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G51680.3 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 408 17 352 2e-97 132.1 43.4 58.8
Subject 539 22 356
Annot | Symbols: 4CL1, 4CL.1, AT4CL1 | 4-coumarate:CoA ligase 1 | chr1:19159080-19161464 REVERSE LENGTH=539
NR ref|XP_004973071.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 408 17 352 e-159 140.2 68.9 75.2
Subject 572 23 363
Annot PREDICTED: probable 4-coumarate--CoA ligase 1 [Setaria italica]
IRGSP Os08t0245200-01_chr08_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 408 1 352 e-143 138.2 68.4 77.9
Subject 564 1 355
Annot
Sbicolor Sobic.007G089900.1.p|Chr07|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 408 17 352 e-154 140 69.9 76.2
Subject 571 26 364
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00089.1.g00090.1.am.mk length: 408 aa.
IPR000873 AMP-dependent synthetase/ligase
method AccNumber shortName E-value location
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
HMMPfam PF00501 AMP-binding 1.7e-58 49-344
IPR020845 AMP-binding, conserved site
PatternScan PS00455 AMP_BINDING NA 203-214
no_ID  
Gene3D G3DSA:3.40.50.980 no description 5.4e-40 47-207
208-342
HMMPanther PTHR24096 FAMILY 7.3e-114 1-348
HMMPanther PTHR24096:SF16 SUBFAMILY 7.3e-114 1-348
Seg seg seg NA 2-17
68-88
179-199
292-306
superfamily SSF56801 Acetyl-CoA 4.1e-75 34-348
Pseudomolecule
Chromosome Start End Strand
1328265022828634+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00089.1 maker_non_over exon 84916 85959 . + . ID=Zjn_sc00089.1.g00090.1.am.mk:exon:1
Zjn_sc00089.1 maker_non_over exon 86786 86933 . + . ID=Zjn_sc00089.1.g00090.1.am.mk:exon:2
Zjn_sc00089.1 maker_non_over exon 87014 87048 . + . ID=Zjn_sc00089.1.g00090.1.am.mk:exon:3

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