Z. japonica Nagirizaki
Zjn_sc00088.1.g02550.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G19790.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 399 48 113 4e-26 63.4 13 15.3
Subject 253 11 77
Annot | Symbols: RAP2.11 | related to AP2 11 | chr5:6689271-6690032 REVERSE LENGTH=253
NR ref|XP_002442409.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 399 1 399 2e-93 105.8 61.4 69.7
Subject 422 1 422
Annot hypothetical protein SORBIDRAFT_08g019530 [Sorghum bicolor] gi|241943102|gb|EES16247.1| hypothetical protein SORBIDRAFT_08g019530 [Sorghum bicolor]
IRGSP Os12t0582900-01_chr12_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 399 53 399 7e-70 99.5 47.9 56.4
Subject 397 61 394
Annot
Sbicolor Sobic.008G145000.1.p|Chr08|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 399 1 399 1e-97 119.8 61.4 69.7
Subject 478 57 478
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00088.1.g02550.1.sm.mk length: 399 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 1.8e-07 58-69
80-96
Gene3D G3DSA:3.30.730.10 no description 2.4e-26 57-113
HMMPfam PF00847 AP2 7.2e-16 57-106
HMMSmart SM00380 DNA-binding 5.9e-34 57-120
ProfileScan PS51032 AP2_ERF 19.282 57-114
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 1.1e-20 56-117
no_ID  
HMMPanther PTHR31194 SHN 5.1e-22 52-113
HMMPanther PTHR31194:SF0 SHN 5.1e-22 52-113
Seg seg seg NA 7-20
41-52
90-101
123-135
165-180
214-225
327-349
359-369
Pseudomolecule
Chromosome Start End Strand
1564539596455158+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00088.1 maker_non_over exon 1235707 1236906 . - . ID=Zjn_sc00088.1.g02550.1.sm.mk:exon:1

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