Z. japonica Nagirizaki
Zjn_sc00088.1.g02540.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G19580.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 352 167 349 5e-32 77.6 25.3 32.4
Subject 273 66 257
Annot | Symbols: AZF2, ZF2 | zinc-finger protein 2 | chr3:6803293-6804114 REVERSE LENGTH=273
NR gb|ABZ80832.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 352 166 352 2e-40 68.5 31 37.2
Subject 241 55 241
Annot Q-type C2H2 zinc finger protein [Triticum aestivum]
IRGSP Os12t0583700-00_chr12_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 352 162 352 7e-42 70.2 31 36.4
Subject 247 51 247
Annot
Sbicolor Sobic.008G144500.1.p|Chr08|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 352 171 350 2e-42 82.4 33.2 36.6
Subject 290 101 287
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00088.1.g02540.1.am.mk length: 352 aa.
IPR007087 Zinc finger, C2H2
method AccNumber shortName E-value location
Molecular Function GO:0046872 metal ion binding    
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 198-218
260-280
ProfileScan PS50157 ZINC_FINGER_C2H2_2 9.162 196-223
258-280
IPR015880 Zinc finger, C2H2-like
HMMSmart SM00355 zinc 0.13 196-218
258-280
no_ID  
HMMPanther PTHR26374 FAMILY 1.1e-26 166-280
HMMPanther PTHR26374:SF121SUBFAMILY NOT 1.1e-26 166-280
HMMPfam PF13912 zf-C2H2_6 5.2e-10 195-220
257-281
Seg seg seg NA 121-136
151-170
231-244
287-298
306-313
superfamily SSF57667 C2H2 2.9e-08 194-280
Pseudomolecule
Chromosome Start End Strand
1564571836459877-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00088.1 maker_non_over exon 1230988 1230998 . + . ID=Zjn_sc00088.1.g02540.1.am.mk:exon:1
Zjn_sc00088.1 maker_non_over exon 1231626 1231841 . + . ID=Zjn_sc00088.1.g02540.1.am.mk:exon:2
Zjn_sc00088.1 maker_non_over exon 1232318 1232388 . + . ID=Zjn_sc00088.1.g02540.1.am.mk:exon:3
Zjn_sc00088.1 maker_non_over exon 1232922 1233682 . + . ID=Zjn_sc00088.1.g02540.1.am.mk:exon:4

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