Z. japonica Nagirizaki
Zjn_sc00088.1.g01560.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G43010.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 536 24 407 4e-38 80.2 27.4 37.5
Subject 430 25 428
Annot | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interacting factor 4 | chr2:17887003-17888823 FORWARD LENGTH=430
NR ref|XP_004963135.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 536 1 401 e-114 76.3 49.6 53.9
Subject 409 1 408
Annot PREDICTED: transcription factor PIF4-like isoform X1 [Setaria italica] gi|514754846|ref|XP_004963136.1| PREDICTED: transcription factor PIF4-like isoform X1 [Setaria italica]
IRGSP Os12t0610200-01_chr12_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 536 1 390 e-112 83 46.3 52.1
Subject 445 1 414
Annot
Sbicolor Sobic.008G163700.2.p|Chr08|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 536 1 393 2e-76 88.6 40.9 46.3
Subject 475 14 437
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00088.1.g01560.1.am.mk length: 536 aa.
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain
method AccNumber shortName E-value location
Molecular Function GO:0046983 protein dimerization activity    
Gene3D G3DSA:4.10.280.10 no description 6.2e-20 246-306
HMMPfam PF00010 HLH 2.2e-14 253-299
HMMSmart SM00353 helix 1.1e-18 255-304
ProfileScan PS50888 BHLH 18.470 249-298
superfamily SSF47459 HLH, 2.8e-20 247-331
IPR024097 Basic helix-loop-helix leucine zipper transcription factor
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPanther PTHR10014 BASIC 2.1e-38 245-330
IPR024102 Basic helix-loop-helix leucine zipper transcription factor, plant
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPanther PTHR10014:SF30 BASIC 2.1e-38 245-330
no_ID  
Coil coil coiled-coil NA 255-276
Seg seg seg NA 131-144
162-173
393-409
444-454
522-536
Pseudomolecule
Chromosome Start End Strand
1569403826947145+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00088.1 maker_non_over exon 743720 743912 . - . ID=Zjn_sc00088.1.g01560.1.am.mk:exon:7
Zjn_sc00088.1 maker_non_over exon 743993 744134 . - . ID=Zjn_sc00088.1.g01560.1.am.mk:exon:6
Zjn_sc00088.1 maker_non_over exon 748802 748937 . - . ID=Zjn_sc00088.1.g01560.1.am.mk:exon:5
Zjn_sc00088.1 maker_non_over exon 749017 749313 . - . ID=Zjn_sc00088.1.g01560.1.am.mk:exon:4
Zjn_sc00088.1 maker_non_over exon 749420 749485 . - . ID=Zjn_sc00088.1.g01560.1.am.mk:exon:3
Zjn_sc00088.1 maker_non_over exon 749605 750322 . - . ID=Zjn_sc00088.1.g01560.1.am.mk:exon:2
Zjn_sc00088.1 maker_non_over exon 750425 750483 . - . ID=Zjn_sc00088.1.g01560.1.am.mk:exon:1

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