Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00088.1.g01080.1.sm.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00088.1)

BLAST

TAIR10	AT1G30100.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	600	8	600	0.0	98.2	62.2	75.2
		Subject	589	10	589
		Annot	\| Symbols: NCED5, ATNCED5 \| nine-cis-epoxycarotenoid dioxygenase 5 \| chr1:10571383-10573152 FORWARD LENGTH=589
NR	ref\|NP_001177063.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	600	3	600	0.0	102.2	82.5	88.3
		Subject	613	4	613
		Annot	Os12g0617400 [Oryza sativa Japonica Group] gi\|56681453\|gb\|AAW21321.1\| 9-cis-epoxycarotenoid dioxygenase 5 [Oryza sativa Japonica Group] gi\|77557074\|gb\|ABA99870.1\| viviparous-14, putative, expressed [Oryza sativa Japonica Group] gi\|255670487\|dbj\|BAH95791.1\| Os12g0617400 [Oryza sativa Japonica Group]
IRGSP	Os03t0645900-00_chr03_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	600	5	600	0.0	101.3	78.2	85.7
		Subject	608	3	608
		Annot
Sbicolor	Sobic.001G155300.1.p\|Chr01\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	600	1	600	0.0	101.8	78.7	86.7
		Subject	611	1	611
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR004294	Carotenoid oxygenase
Zjn_sc00088.1.g01080.1.sm.mk				length: 600 aa.
method	AccNumber	shortName	E-value	location
HMMPanther	PTHR10543	BETA-CAROTENE	9.9e-272	58-600
HMMPfam	PF03055	RPE65	4.8e-134	122-591
no_ID
HMMPanther	PTHR10543:SF1	9-CIS-EPOXYCAROTENOID	9.9e-272	58-600
Seg	seg	seg	NA	36-47 82-95 221-233

Pseudomolecule

Chromosome	Start	End	Strand
15	7187682	7189484	+

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00088.1	maker_non_over	exon	501381	503183	.	-	.	ID=Zjn_sc00088.1.g01080.1.sm.mk:exon:1