Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00086.1.g02880.1.sm.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00086.1)

BLAST

TAIR10	AT3G54820.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	275	2	272	e-121	104	74.5	85.8
		Subject	286	9	283
		Annot	\| Symbols: PIP2D, PIP2;5 \| plasma membrane intrinsic protein 2;5 \| chr3:20302117-20303738 FORWARD LENGTH=286
NR	ref\|XP_002489214.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	275	4	274	e-136	102.5	88.4	92
		Subject	282	10	281
		Annot	hypothetical protein SORBIDRAFT_0012s010440 [Sorghum bicolor] gi\|241947074\|gb\|EES20219.1\| hypothetical protein SORBIDRAFT_0012s010440 [Sorghum bicolor]
IRGSP	Os07t0448800-01_chr07_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	275	6	272	e-125	105.5	77.5	87.6
		Subject	290	17	289
		Annot
Sbicolor	Sobic.K007000.1.p\|super_12\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	275	4	274	e-139	102.5	88.4	92
		Subject	282	10	281
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR000425	Major intrinsic protein
Zjn_sc00086.1.g02880.1.sm.mk				length: 275 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005215	transporter activity
Biological Process	GO:0006810	transport
Cellular Component	GO:0016020	membrane
FPrintScan	PR00783	MINTRINSICP	1.5e-71	31-50 75-99 112-131 161-179 197-219 237-257
HMMPanther	PTHR19139	AQUAPORIN	3.2e-185	7-259
HMMPfam	PF00230	MIP	3.7e-84	24-254
HMMTigr	TIGR00861	MIP:	2e-64	35-253
IPR022357	Major intrinsic protein, conserved site
Molecular Function	GO:0005215	transporter activity
Biological Process	GO:0006810	transport
Cellular Component	GO:0016020	membrane
PatternScan	PS00221	MIP	NA	93-101
IPR023271	Aquaporin-like
Gene3D	G3DSA:1.20.1080.10	no description	4.6e-89	5-262
superfamily	SSF81338	Aquaporin-like	4.5e-63	20-274
no_ID
HMMPanther	PTHR19139:SF27	AQUAPORIN-RELATED	3.2e-185	7-259

Pseudomolecule

Chromosome	Start	End	Strand
8	1564077	1564904	+

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00086.1	maker_non_over	exon	1228949	1229776	.	-	.	ID=Zjn_sc00086.1.g02880.1.sm.mk:exon:1