Z. japonica Nagirizaki
Zjn_sc00086.1.g02300.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G10230.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 527 52 526 0.0 95.1 64.1 74.6
Subject 501 30 501
Annot | Symbols: LYC | lycopene cyclase | chr3:3164340-3165845 REVERSE LENGTH=501
NR ref|XP_002453448.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 527 90 526 0.0 93.4 77.2 80.5
Subject 492 53 491
Annot hypothetical protein SORBIDRAFT_04g006120 [Sorghum bicolor] gi|241933279|gb|EES06424.1| hypothetical protein SORBIDRAFT_04g006120 [Sorghum bicolor]
IRGSP Os02t0190600-00_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 527 90 527 0.0 92.8 75.3 78.9
Subject 489 49 489
Annot
Sbicolor Sobic.004G074000.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 527 90 526 0.0 93.4 77.2 80.5
Subject 492 53 491
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00086.1.g02300.1.am.mk length: 527 aa.
IPR008671 Lycopene cyclase-type, FAD-binding
method AccNumber shortName E-value location
Biological Process GO:0016117 carotenoid biosynthetic process    
Molecular Function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen    
HMMPfam PF05834 Lycopene_cycl 1.1e-126 110-503
IPR010108 Lycopene cyclase, beta/epsilon
Biological Process GO:0016117 carotenoid biosynthetic process    
Molecular Function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen    
HMMTigr TIGR01790 carotene-cycl: 7e-144 110-506
no_ID  
Gene3D G3DSA:3.50.50.60 no description 4.6e-25 373-413
HMMPanther PTHR32512 FAMILY 0 90-527
HMMPanther PTHR32512:SF2 SUBFAMILY 0 90-527
Seg seg seg NA 25-36
46-66
67-77
87-103
109-124
415-427
477-495
superfamily SSF51905 FAD/NAD(P)-binding 1.6e-30 108-495
Pseudomolecule
Chromosome Start End Strand
818062491808969-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00086.1 maker_non_over exon 984884 985000 . + . ID=Zjn_sc00086.1.g02300.1.am.mk:exon:1
Zjn_sc00086.1 maker_non_over exon 985728 985886 . + . ID=Zjn_sc00086.1.g02300.1.am.mk:exon:2
Zjn_sc00086.1 maker_non_over exon 986297 987604 . + . ID=Zjn_sc00086.1.g02300.1.am.mk:exon:3

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