Z. japonica Nagirizaki
Zjn_sc00084.1.g00100.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G23240.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 387 147 289 5e-35 56.3 19.6 24.3
Subject 218 79 209
Annot | Symbols: ERF1, ATERF1 | ethylene response factor 1 | chr3:8295705-8296361 FORWARD LENGTH=218
NR ref|NP_001130815.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 387 63 293 1e-50 66.4 38.8 45
Subject 257 6 252
Annot putative AP2/EREBP transcription factor superfamily protein [Zea mays] gi|194690190|gb|ACF79179.1| unknown [Zea mays] gi|408690306|gb|AFU81613.1| AP2-EREBP-type transcription factor, partial [Zea mays subsp. mays] gi|414884656|tpg|DAA60670.1| TPA: putative AP2/EREBP transcription factor superfamily protein [Zea mays]
IRGSP Os03t0860100-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 387 133 295 3e-40 58.1 23.3 29.2
Subject 225 63 212
Annot
Sbicolor Sobic.002G139400.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 387 53 293 1e-50 69.5 38.5 43.7
Subject 269 1 264
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00084.1.g00100.1.am.mk length: 387 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 1.4e-07 150-161
173-189
Gene3D G3DSA:3.30.730.10 no description 2.2e-26 150-207
HMMPfam PF00847 AP2 2.1e-13 150-199
HMMSmart SM00380 DNA-binding 8.8e-32 149-213
ProfileScan PS51032 AP2_ERF 21.588 149-207
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 2.8e-22 148-210
no_ID  
HMMPanther PTHR31190 FAMILY 1.1e-20 123-222
HMMPanther PTHR31190:SF0 SUBFAMILY 1.1e-20 123-222
Seg seg seg NA 100-129
214-230
262-281
292-305
354-366
Pseudomolecule
Chromosome Start End Strand
1988721608875393+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00084.1 maker_non_over exon 86906 86968 . + . ID=Zjn_sc00084.1.g00100.1.am.mk:exon:1
Zjn_sc00084.1 maker_non_over exon 87061 87878 . + . ID=Zjn_sc00084.1.g00100.1.am.mk:exon:2
Zjn_sc00084.1 maker_non_over exon 89711 89919 . + . ID=Zjn_sc00084.1.g00100.1.am.mk:exon:3
Zjn_sc00084.1 maker_non_over exon 90066 90139 . + . ID=Zjn_sc00084.1.g00100.1.am.mk:exon:4

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