Z. japonica Nagirizaki
Zjn_sc00078.1.g03000.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G02080.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 137 4 136 9e-75 376.6 86.1 94.2
Subject 516 64 196
Annot | Symbols: AtIDD4, IDD4 | indeterminate(ID)-domain 4 | chr2:518328-521170 REVERSE LENGTH=516
NR ref|XP_008649012.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 137 4 136 4e-79 397.8 94.2 96.4
Subject 545 51 183
Annot PREDICTED: LOC542697 isoform X5 [Zea mays] gi|414870162|tpg|DAA48719.1| TPA: hypothetical protein ZEAMMB73_834941 [Zea mays]
IRGSP Os09t0555700-03_chr09_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 137 4 136 7e-79 390.5 90.5 95.6
Subject 535 57 189
Annot
Sbicolor Sobic.007G173200.1.p|Chr07|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 137 4 136 5e-80 403.6 92.7 95.6
Subject 553 61 193
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00078.1.g03000.1.sm.mk length: 137 aa.
IPR007087 Zinc finger, C2H2
method AccNumber shortName E-value location
Molecular Function GO:0046872 metal ion binding    
HMMPfam PF00096 zf-C2H2 0.013 99-121
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 25-45
ProfileScan PS50157 ZINC_FINGER_C2H2_2 11.094 23-45
IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain
Molecular Function GO:0003676 nucleic acid binding    
Gene3D G3DSA:3.30.160.60 no description 4.6e-05 22-45
87-120
IPR015880 Zinc finger, C2H2-like
HMMSmart SM00355 zinc 1.1e+02 23-45
99-119
IPR022755 Zinc finger, double-stranded RNA binding
HMMPfam PF12171 zf-C2H2_jaz 1.1e-05 22-45
no_ID  
HMMPanther PTHR10593 SERINE/THREONINE-PROTEIN 5e-110 4-136
HMMPanther PTHR10593:SF17 SUBFAMILY 5e-110 4-136
superfamily SSF57667 C2H2 2.9e-08 21-120
Pseudomolecule
Chromosome Start End Strand
131142236011422839-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00078.1 maker_non_over exon 1199257 1199660 . - . ID=Zjn_sc00078.1.g03000.1.sm.mk:exon:2
Zjn_sc00078.1 maker_non_over exon 1199727 1199736 . - . ID=Zjn_sc00078.1.g03000.1.sm.mk:exon:1

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