Z. japonica Nagirizaki
Zjn_sc00078.1.g00230.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G42200.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 390 24 274 3e-42 96.2 30.5 35.4
Subject 375 32 255
Annot | Symbols: SPL9, AtSPL9 | squamosa promoter binding protein-like 9 | chr2:17587601-17589451 FORWARD LENGTH=375
NR ref|XP_004974838.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 390 18 390 e-141 102.8 75.4 81.8
Subject 401 21 401
Annot PREDICTED: squamosa promoter-binding-like protein 14 isoform X1 [Setaria italica]
IRGSP Os08t0509600-01_chr08_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 390 20 390 e-117 106.9 66.2 72.8
Subject 417 32 417
Annot
Sbicolor Sobic.007G210200.1.p|Chr07|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 390 18 390 e-137 104.9 70.5 79
Subject 409 16 409
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00078.1.g00230.1.am.mk length: 390 aa.
IPR004333 Transcription factor, SBP-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Gene3D G3DSA:4.10.1100.10 no description 3.9e-32 75-143
HMMPfam PF03110 SBP 2e-40 81-156
ProfileScan PS51141 ZF_SBP 31.941 79-156
superfamily SSF103612 SBT 2.5e-40 79-164
no_ID  
HMMPanther PTHR31251 FAMILY 1.4e-38 66-163
HMMPanther PTHR31251:SF0 SUBFAMILY 1.4e-38 66-163
Seg seg seg NA 5-17
35-81
242-256
279-294
343-354
Pseudomolecule
Chromosome Start End Strand
131031095210314786-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00078.1 maker_non_over exon 87849 88501 . - . ID=Zjn_sc00078.1.g00230.1.am.mk:exon:3
Zjn_sc00078.1 maker_non_over exon 88597 88733 . - . ID=Zjn_sc00078.1.g00230.1.am.mk:exon:2
Zjn_sc00078.1 maker_non_over exon 91301 91683 . - . ID=Zjn_sc00078.1.g00230.1.am.mk:exon:1

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