Z. japonica Nagirizaki
Zjn_sc00077.1.g00090.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G23240.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 178 34 177 9e-32 122.5 42.7 54.5
Subject 218 79 213
Annot | Symbols: ERF1, ATERF1 | ethylene response factor 1 | chr3:8295705-8296361 FORWARD LENGTH=218
NR ref|XP_003571392.2| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 178 36 177 2e-36 104.5 55.6 65.7
Subject 186 27 175
Annot PREDICTED: ethylene-responsive transcription factor 15-like [Brachypodium distachyon]
IRGSP Os03t0860100-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 178 19 177 4e-32 126.4 47.2 56.7
Subject 225 58 210
Annot
Sbicolor Sobic.002G115400.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 178 1 178 2e-40 141.6 77 82
Subject 252 46 252
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00077.1.g00090.1.am.mk length: 178 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 4.3e-10 37-48
76-96
Gene3D G3DSA:3.30.730.10 no description 4.6e-24 37-95
HMMPfam PF00847 AP2 4.4e-13 37-86
HMMSmart SM00380 DNA-binding 1.5e-26 36-100
ProfileScan PS51032 AP2_ERF 19.849 36-94
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 5.6e-21 35-97
no_ID  
HMMPanther PTHR31190 FAMILY 1.3e-15 34-103
Seg seg seg NA 12-25
70-84
101-116
122-139
Pseudomolecule
Chromosome Start End Strand
321538202154356-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00077.1 maker_non_over exon 100411 100947 . + . ID=Zjn_sc00077.1.g00090.1.am.mk:exon:1

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