Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00075.1.g01060.1.sm.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00075.1)

BLAST

TAIR10	AT3G10920.2		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	114	1	101	8e-34	201.8	60.5	70.2
		Subject	230	1	99
		Annot	\| Symbols: MSD1 \| manganese superoxide dismutase 1 \| chr3:3418015-3419581 FORWARD LENGTH=230
NR	gb\|AFO59568.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	114	1	101	6e-44	204.4	79.8	81.6
		Subject	233	1	101
		Annot	superoxide dismutase [Saccharum hybrid cultivar GT28] gi\|682122779\|gb\|AIN34999.1\| manganese superoxide dismutase 2 [Miscanthus x giganteus] gi\|682122785\|gb\|AIN35002.1\| manganese superoxide dismutase [Miscanthus sinensis]
IRGSP	Os05t0323900-01_chr05_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	114	1	101	1e-36	202.6	71.9	77.2
		Subject	231	1	99
		Annot
Sbicolor	Sobic.009G093200.1.p\|Chr09\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	114	1	101	2e-46	204.4	78.9	80.7
		Subject	233	1	101
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR001189	Manganese/iron superoxide dismutase
Zjn_sc00075.1.g01060.1.sm.mk				length: 114 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0004784	superoxide dismutase activity
Biological Process	GO:0006801	superoxide metabolic process
Molecular Function	GO:0046872	metal ion binding
Biological Process	GO:0055114	oxidation-reduction process
FPrintScan	PR01703	MNSODISMTASE	1.9e-08	36-47 57-70
HMMPanther	PTHR11404	SUPEROXIDE	2.9e-39	21-101
IPR019831	Manganese/iron superoxide dismutase, N-terminal
Molecular Function	GO:0004784	superoxide dismutase activity
Biological Process	GO:0006801	superoxide metabolic process
Molecular Function	GO:0046872	metal ion binding
Biological Process	GO:0055114	oxidation-reduction process
HMMPfam	PF00081	Sod_Fe_N	1.1e-24	34-102
superfamily	SSF46609	Fe,Mn	5.5e-25	20-107
no_ID
Gene3D	G3DSA:1.10.287.990	no description	5.1e-18	50-101
HMMPanther	PTHR11404:SF5	SUPEROXIDE	2.9e-39	21-101
Seg	seg	seg	NA	12-30

Pseudomolecule

Chromosome	Start	End	Strand
18	4294855	4295199	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00075.1	maker_non_over	exon	1055146	1055490	.	+	.	ID=Zjn_sc00075.1.g01060.1.sm.mk:exon:1