Z. japonica Nagirizaki
Zjn_sc00075.1.g00720.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G27950.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 273 26 218 9e-24 122.7 28.6 38.1
Subject 335 43 216
Annot | Symbols: CRF4 | cytokinin response factor 4 | chr4:13909732-13910739 REVERSE LENGTH=335
NR ref|NP_001055176.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 273 3 273 4e-54 102.9 55.7 66.3
Subject 281 7 281
Annot Os05g0316800 [Oryza sativa Japonica Group] gi|55168139|gb|AAV44006.1| unknown protein [Oryza sativa Japonica Group] gi|113578727|dbj|BAF17090.1| Os05g0316800 [Oryza sativa Japonica Group] gi|215766767|dbj|BAG98995.1| unnamed protein product [Oryza sativa Japonica Group]
IRGSP Os05t0316800-01_chr05_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 273 3 273 4e-57 102.9 55.7 66.3
Subject 281 7 281
Annot
Sbicolor Sobic.003G381400.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 273 3 269 5e-49 111 58.6 67.4
Subject 303 2 296
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00075.1.g00720.1.am.mk length: 273 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 2.2e-09 97-108
119-135
Gene3D G3DSA:3.30.730.10 no description 1.1e-27 97-154
HMMPfam PF00847 AP2 5.2e-16 97-145
HMMSmart SM00380 DNA-binding 2.4e-34 96-159
ProfileScan PS51032 AP2_ERF 21.944 96-153
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 6.7e-23 95-156
no_ID  
HMMPanther PTHR31677 FAMILY 5.9e-22 59-166
Seg seg seg NA 32-48
80-95
129-141
157-173
186-197
238-246
260-272
Pseudomolecule
Chromosome Start End Strand
1846289014629722-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00075.1 maker_non_over exon 720623 721444 . + . ID=Zjn_sc00075.1.g00720.1.am.mk:exon:1

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