Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00075.1.g00380.1.sm.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00075.1)

BLAST

TAIR10	AT1G55020.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	254	1	254	2e-76	338.2	53.1	69.7
		Subject	859	611	859
		Annot	\| Symbols: LOX1, ATLOX1 \| lipoxygenase 1 \| chr1:20525798-20530143 FORWARD LENGTH=859
NR	ref\|XP_004962505.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	254	1	254	e-128	333.5	85.8	92.1
		Subject	847	594	847
		Annot	PREDICTED: probable linoleate 9S-lipoxygenase 5 [Setaria italica]
IRGSP	Os05t0304600-01_chr05_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	254	1	254	e-123	333.5	81.9	89
		Subject	847	592	847
		Annot
Sbicolor	Sobic.008G191000.1.p\|Chr08\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	254	1	254	e-128	337.4	83.9	90.6
		Subject	857	604	857
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR000907	Lipoxygenase
Zjn_sc00075.1.g00380.1.sm.mk				length: 254 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
Molecular Function	GO:0046872	metal ion binding
Biological Process	GO:0055114	oxidation-reduction process
HMMPanther	PTHR11771	LIPOXYGENASE	7.3e-126	1-254
IPR013819	Lipoxygenase, C-terminal
Molecular Function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
Molecular Function	GO:0046872	metal ion binding
Biological Process	GO:0055114	oxidation-reduction process
HMMPfam	PF00305	Lipoxygenase	1.1e-85	7-231
ProfileScan	PS51393	LIPOXYGENASE_3	96.440	1-254
superfamily	SSF48484	Lipoxigenase	3.4e-90	5-254
no_ID
Coil	coil	coiled-coil	NA	192-213
Gene3D	G3DSA:1.20.245.10	no description	2.5e-80	7-254
HMMPanther	PTHR11771:SF2	LIPOXYGENASE	7.3e-126	1-254
Seg	seg	seg	NA	187-203 237-248

Pseudomolecule

Chromosome	Start	End	Strand
18	4982691	4983455	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00075.1	maker_non_over	exon	366890	367654	.	+	.	ID=Zjn_sc00075.1.g00380.1.sm.mk:exon:1