Z. japonica Nagirizaki
Zjn_sc00072.1.g00140.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G58780.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 86 11 86 2e-28 280.2 68.6 77.9
Subject 241 4 76
Annot | Symbols: SHP1, AGL1 | K-box region and MADS-box transcription factor family protein | chr3:21739150-21741766 FORWARD LENGTH=241
NR ref|XP_004960599.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 86 3 85 3e-28 334.9 77.9 86
Subject 288 40 115
Annot PREDICTED: MADS-box transcription factor 58-like [Setaria italica]
IRGSP Os01t0201700-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 86 28 85 7e-27 184.9 60.5 67.4
Subject 159 47 105
Annot
Sbicolor Sobic.009G075500.2.p|Chr09|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 86 5 85 1e-30 333.7 73.3 83.7
Subject 287 31 115
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00072.1.g00140.1.sm.mk length: 86 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 4.5e-29 28-48
48-63
63-84
HMMPfam PF00319 SRF-TF 1.5e-29 34-84
HMMSmart SM00432 no description 1.2e-34 27-85
ProfileScan PS50066 MADS_BOX_2 28.917 32-86
superfamily SSF55455 SRF-like 1.7e-23 27-86
no_ID  
HMMPanther PTHR11945 MADS 3.9e-42 16-85
HMMPanther PTHR11945:SF19 MADS 3.9e-42 16-85
Seg seg seg NA 2-31
Pseudomolecule
Chromosome Start End Strand
1735420913542351-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00072.1 maker_non_over exon 210918 211178 . - . ID=Zjn_sc00072.1.g00140.1.sm.mk:exon:1

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