Z. japonica Nagirizaki
Zjn_sc00072.1.g00130.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT3G58780.2 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
148 |
8 |
73 |
1e-13 |
162.8 |
19.6 |
36.5 |
| Subject |
241 |
87 |
152 |
|
| Annot |
| Symbols: SHP1, AGL1 | K-box region and MADS-box transcription factor family protein | chr3:21739150-21741766 FORWARD LENGTH=241 |
| NR |
ref|NP_001105321.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
148 |
18 |
139 |
8e-33 |
193.2 |
55.4 |
66.2 |
| Subject |
286 |
142 |
284 |
|
| Annot |
homologue of Arabidopsis gene AGAMOUS [Zea mays] gi|309574|gb|AAA02933.1| homologue of Arabidopsis gene AGAMOUS [Zea mays] gi|413944787|gb|AFW77436.1| zea AGAMOUS-like protein [Zea mays] gi|645168889|gb|AIB05962.1| MADS transcription factor, partial [synthetic construct] |
| IRGSP |
Os05t0203800-01_chr05_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
148 |
15 |
91 |
7e-22 |
157.4 |
35.8 |
45.3 |
| Subject |
233 |
128 |
232 |
|
| Annot |
|
| Sbicolor |
Sobic.009G075500.2.p|Chr09|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
148 |
17 |
140 |
4e-37 |
193.9 |
58.1 |
68.2 |
| Subject |
287 |
144 |
287 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00072.1.g00130.1.sm.mkhc |
length: 148 aa. |
| IPR002487 |
Transcription factor, K-box |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
|
|
| Cellular Component |
GO:0005634 |
nucleus |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| HMMPfam |
PF01486 |
K-box |
2.1e-17 |
12-73 |
| ProfileScan |
PS51297 |
K_BOX |
9.790 |
16-131 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
16-37 |
| Seg |
seg |
seg |
NA |
113-129 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 17 | 3536381 | 3540540 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00072.1 |
maker |
exon |
205208 |
205352 |
. |
- |
. |
ID=Zjn_sc00072.1.g00130.1.sm.mkhc:exon:5 |
| Zjn_sc00072.1 |
maker |
exon |
205745 |
205943 |
. |
- |
. |
ID=Zjn_sc00072.1.g00130.1.sm.mkhc:exon:4 |
| Zjn_sc00072.1 |
maker |
exon |
206347 |
206446 |
. |
- |
. |
ID=Zjn_sc00072.1.g00130.1.sm.mkhc:exon:3 |
| Zjn_sc00072.1 |
maker |
exon |
206549 |
206610 |
. |
- |
. |
ID=Zjn_sc00072.1.g00130.1.sm.mkhc:exon:2 |
| Zjn_sc00072.1 |
maker |
exon |
209317 |
209367 |
. |
- |
. |
ID=Zjn_sc00072.1.g00130.1.sm.mkhc:exon:1 |