Z. japonica Nagirizaki
Zjn_sc00071.1.g01220.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT4G20460.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
331 |
50 |
331 |
e-140 |
124.2 |
68.9 |
77.6 |
| Subject |
411 |
130 |
411 |
|
| Annot |
| Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:11029767-11031765 REVERSE LENGTH=411 |
| NR |
ref|XP_003573339.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
331 |
50 |
331 |
e-153 |
122.4 |
77.6 |
80.7 |
| Subject |
405 |
124 |
405 |
|
| Annot |
PREDICTED: probable UDP-arabinose 4-epimerase 3 [Brachypodium distachyon] |
| IRGSP |
Os08t0129700-02_chr08_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
331 |
50 |
331 |
e-154 |
122.7 |
77 |
80.1 |
| Subject |
406 |
124 |
406 |
|
| Annot |
|
| Sbicolor |
Sobic.001G400000.1.p|Chr01|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
331 |
50 |
331 |
e-155 |
123 |
78.9 |
81 |
| Subject |
407 |
124 |
407 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00071.1.g01220.1.sm.mkhc |
length: 331 aa. |
| IPR001509 |
NAD-dependent epimerase/dehydratase |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Biological Process |
GO:0044237 |
cellular metabolic process |
|
|
| Molecular Function |
GO:0050662 |
coenzyme binding |
|
|
| HMMPfam |
PF01370 |
Epimerase |
5.9e-35 |
54-253 |
| IPR005886 |
UDP-glucose 4-epimerase GalE |
| Molecular Function |
GO:0003978 |
UDP-glucose 4-epimerase activity |
|
|
| Biological Process |
GO:0006012 |
galactose metabolic process |
|
|
| HMMPanther |
PTHR10366:SF39 |
UDP-GLUCOSE |
2.1e-142 |
56-331 |
| HMMTigr |
TIGR01179 |
galE: |
2e-97 |
54-327 |
| IPR016040 |
NAD(P)-binding domain |
| Gene3D |
G3DSA:3.40.50.720 |
no description |
9.9e-47 |
56-222 |
| IPR025308 |
UDP-glucose 4-epimerase C-terminal domain |
| HMMPfam |
PF13950 |
Epimerase_Csub |
2.2e-18 |
266-328 |
| no_ID |
|
| Gene3D |
G3DSA:3.90.25.10 |
no description |
1.4e-27 |
223-328 |
| HMMPanther |
PTHR10366 |
NAD |
2.1e-142 |
56-331 |
| superfamily |
SSF51735 |
NAD(P)-binding |
1e-58 |
56-330 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 14 | 592277 | 597651 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00071.1 |
maker |
exon |
592277 |
592372 |
. |
+ |
. |
ID=Zjn_sc00071.1.g01220.1.sm.mkhc:exon:1 |
| Zjn_sc00071.1 |
maker |
exon |
592973 |
593099 |
. |
+ |
. |
ID=Zjn_sc00071.1.g01220.1.sm.mkhc:exon:2 |
| Zjn_sc00071.1 |
maker |
exon |
593823 |
593947 |
. |
+ |
. |
ID=Zjn_sc00071.1.g01220.1.sm.mkhc:exon:3 |
| Zjn_sc00071.1 |
maker |
exon |
594995 |
595086 |
. |
+ |
. |
ID=Zjn_sc00071.1.g01220.1.sm.mkhc:exon:4 |
| Zjn_sc00071.1 |
maker |
exon |
595419 |
595560 |
. |
+ |
. |
ID=Zjn_sc00071.1.g01220.1.sm.mkhc:exon:5 |
| Zjn_sc00071.1 |
maker |
exon |
595749 |
595843 |
. |
+ |
. |
ID=Zjn_sc00071.1.g01220.1.sm.mkhc:exon:6 |
| Zjn_sc00071.1 |
maker |
exon |
595933 |
596062 |
. |
+ |
. |
ID=Zjn_sc00071.1.g01220.1.sm.mkhc:exon:7 |
| Zjn_sc00071.1 |
maker |
exon |
596226 |
596370 |
. |
+ |
. |
ID=Zjn_sc00071.1.g01220.1.sm.mkhc:exon:8 |
| Zjn_sc00071.1 |
maker |
exon |
597085 |
597651 |
. |
+ |
. |
ID=Zjn_sc00071.1.g01220.1.sm.mkhc:exon:9 |