Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00071.1.g00950.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00071.1)

	Init: Term: reverse complement

BLAST

TAIR10	AT5G40650.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	281	1	278	e-117	99.6	71.2	80.4
		Subject	280	1	277
		Annot	\| Symbols: SDH2-2 \| succinate dehydrogenase 2-2 \| chr5:16281462-16283296 FORWARD LENGTH=280
NR	ref\|NP_001136531.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	281	1	281	e-148	100	92.5	95.7
		Subject	281	1	281
		Annot	uncharacterized protein LOC100216648 [Zea mays] gi\|194696050\|gb\|ACF82109.1\| unknown [Zea mays] gi\|413941747\|gb\|AFW74396.1\| (csu474(rpS14)), mRNA [Zea mays]
IRGSP	Os08t0120000-04_chr08_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	281	1	281	e-142	100	93.2	94.7
		Subject	281	1	281
		Annot
Sbicolor	Sobic.007G023400.2.p\|Chr07\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	281	1	281	e-142	124.2	92.5	94.3
		Subject	349	67	349
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR001041	2Fe-2S ferredoxin-type domain
Zjn_sc00071.1.g00950.1.sm.mkhc				length: 281 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0009055	electron carrier activity
Molecular Function	GO:0051536	iron-sulfur cluster binding
ProfileScan	PS51085	2FE2S_FER_2	9.874	61-141
superfamily	SSF54292	2Fe-2S	4.6e-33	44-150
IPR004489	Succinate dehydrogenase/fumarate reductase iron-sulphur protein
Biological Process	GO:0006099	tricarboxylic acid cycle
Molecular Function	GO:0016491	oxidoreductase activity
Biological Process	GO:0055114	oxidation-reduction process
HMMTigr	TIGR00384	dhsB:	2.6e-85	53-275
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site
Molecular Function	GO:0051537	2 iron, 2 sulfur cluster binding
PatternScan	PS00197	2FE2S_FER_1	NA	102-110
IPR009051	Alpha-helical ferredoxin
Molecular Function	GO:0051536	iron-sulfur cluster binding
superfamily	SSF46548	alpha-helical	2e-39	151-279
IPR012675	Beta-grasp domain
Gene3D	G3DSA:3.10.20.30	no description	3.3e-43	44-150
IPR017896	4Fe-4S ferredoxin-type, iron-sulpur binding domain
Molecular Function	GO:0051536	iron-sulfur cluster binding
ProfileScan	PS51379	4FE4S_FER_2	8.096	184-214
IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site
PatternScan	PS00198	4FE4S_FER_1	NA	194-205
IPR025192	Succinate dehydogenase/fumarate reductase N-terminal
Molecular Function	GO:0009055	electron carrier activity
Molecular Function	GO:0051536	iron-sulfur cluster binding
HMMPfam	PF13085	Fer2_3	1.2e-33	50-156
no_ID
Gene3D	G3DSA:1.10.1060.10	no description	1.9e-54	151-279
HMMPanther	PTHR11921	SUCCINATE	3.6e-141	30-279
HMMPfam	PF13534	Fer4_17	1.3e-09	193-266
Seg	seg	seg	NA	2-25 27-46

Pseudomolecule

Chromosome	Start	End	Strand
14	492498	496904	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00071.1	maker	exon	492498	492624	.	-	.	ID=Zjn_sc00071.1.g00950.1.sm.mkhc:exon:3
Zjn_sc00071.1	maker	exon	492697	493784	.	-	.	ID=Zjn_sc00071.1.g00950.1.sm.mkhc:exon:2
Zjn_sc00071.1	maker	exon	496231	496904	.	-	.	ID=Zjn_sc00071.1.g00950.1.sm.mkhc:exon:1