Z. japonica Nagirizaki
Zjn_sc00071.1.g00530.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G71692.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 61 1 61 5e-26 345.9 80.3 91.8
Subject 211 1 61
Annot | Symbols: AGL12, XAL1 | AGAMOUS-like 12 | chr1:26952903-26954939 REVERSE LENGTH=211
NR ref|XP_002443744.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 61 1 61 3e-26 363.9 98.4 98.4
Subject 222 1 61
Annot hypothetical protein SORBIDRAFT_07g001250 [Sorghum bicolor] gi|241940094|gb|EES13239.1| hypothetical protein SORBIDRAFT_07g001250 [Sorghum bicolor]
IRGSP Os08t0112700-01_chr08_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 61 1 61 2e-28 363.9 95.1 98.4
Subject 222 1 61
Annot
Sbicolor Sobic.007G013800.1.p|Chr07|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 61 1 61 2e-29 363.9 98.4 98.4
Subject 222 1 61
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00071.1.g00530.1.sm.mk length: 61 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 3.3e-27 3-23
23-38
38-59
HMMPfam PF00319 SRF-TF 1.6e-23 10-56
HMMSmart SM00432 no description 1.9e-34 1-60
PatternScan PS00350 MADS_BOX_1 NA 3-57
ProfileScan PS50066 MADS_BOX_2 29.492 1-61
superfamily SSF55455 SRF-like 9.6e-23 1-61
no_ID  
HMMPanther PTHR11945 MADS 1.9e-34 1-60
HMMPanther PTHR11945:SF19 MADS 1.9e-34 1-60
Pseudomolecule
Chromosome Start End Strand
14301045301230+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00071.1 maker_non_over exon 301045 301230 . + . ID=Zjn_sc00071.1.g00530.1.sm.mk:exon:1

Top