Z. japonica Nagirizaki
Zjn_sc00071.1.g00390.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G16500.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 231 82 231 4e-23 116.5 26.4 34.6
Subject 269 99 236
Annot | Symbols: PAP1, IAA26 | phytochrome-associated protein 1 | chr3:5612801-5614208 REVERSE LENGTH=269
NR gb|AFW61438.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 231 14 231 9e-43 100.9 53.2 61
Subject 233 1 213
Annot IAA25-auxin-responsive Aux/IAA family member [Zea mays] gi|645165910|gb|AIB04703.1| AUX/IAA transcription factor, partial [Zea mays]
IRGSP Os08t0109400-01_chr08_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 231 7 231 3e-43 106.5 55.4 64.1
Subject 246 3 224
Annot
Sbicolor Sobic.007G009300.1.p|Chr07|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 231 4 231 3e-39 104.3 50.6 59.7
Subject 241 1 221
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00071.1.g00390.1.sm.mk length: 231 aa.
IPR003311 AUX/IAA protein
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02309 AUX_IAA 1.2e-30 67-231
IPR011525 Aux/IAA-ARF-dimerisation
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 25.435 139-231
no_ID  
HMMPanther PTHR31211 FAMILY 3e-30 83-231
HMMPanther PTHR31211:SF0 SUBFAMILY 3e-30 83-231
Seg seg seg NA 71-95
superfamily SSF54277 CAD 1.7e-09 126-231
Pseudomolecule
Chromosome Start End Strand
14221430222272+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00071.1 maker_non_over exon 221430 221650 . + . ID=Zjn_sc00071.1.g00390.1.sm.mk:exon:1
Zjn_sc00071.1 maker_non_over exon 221798 222272 . + . ID=Zjn_sc00071.1.g00390.1.sm.mk:exon:2

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