Z. japonica Nagirizaki
Zjn_sc00070.1.g00570.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G62000.3 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 313 10 165 8e-40 274.4 30.4 38
Subject 859 28 222
Annot | Symbols: ARF2, ARF1-BP, HSS, ORE14 | auxin response factor 2 | chr5:24910859-24914680 FORWARD LENGTH=859
NR tpg|DAA54920.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 313 35 207 1e-64 211.2 45.7 49.5
Subject 661 17 291
Annot TPA: hypothetical protein ZEAMMB73_084407 [Zea mays]
IRGSP Os12t0479400-01_chr12_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 313 37 165 2e-51 268.4 33.2 36.1
Subject 840 27 205
Annot
Sbicolor Sobic.008G096000.1.p|Chr08|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 313 37 165 1e-51 268.1 34.2 37.1
Subject 839 25 203
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00070.1.g00570.1.sm.mkhc length: 313 aa.
IPR003311 AUX/IAA protein
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02309 AUX_IAA 7.1e-16 224-270
IPR010525 Auxin response factor
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Biological Process GO:0009725 response to hormone stimulus    
HMMPfam PF06507 Auxin_resp 9.3e-15 162-206
IPR011525 Aux/IAA-ARF-dimerisation
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 16.999 207-263
IPR015300 DNA-binding pseudobarrel domain
Gene3D G3DSA:2.40.330.10 no description 0.00056 136-171
superfamily SSF101936 DNA-binding 4.9e-07 137-165
no_ID  
HMMPanther PTHR31384 FAMILY 5.8e-56 15-165
Seg seg seg NA 18-38
234-245
275-284
superfamily SSF54277 CAD 3.5e-07 199-260
Pseudomolecule
Chromosome Start End Strand
1635905243597420+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00070.1 maker exon 720373 720436 . + . ID=Zjn_sc00070.1.g00570.1.sm.mkhc:exon:1
Zjn_sc00070.1 maker exon 720478 720626 . + . ID=Zjn_sc00070.1.g00570.1.sm.mkhc:exon:2
Zjn_sc00070.1 maker exon 721397 721495 . + . ID=Zjn_sc00070.1.g00570.1.sm.mkhc:exon:3
Zjn_sc00070.1 maker exon 721575 721628 . + . ID=Zjn_sc00070.1.g00570.1.sm.mkhc:exon:4
Zjn_sc00070.1 maker exon 721713 721754 . + . ID=Zjn_sc00070.1.g00570.1.sm.mkhc:exon:5
Zjn_sc00070.1 maker exon 722018 722102 . + . ID=Zjn_sc00070.1.g00570.1.sm.mkhc:exon:6
Zjn_sc00070.1 maker exon 723907 723955 . + . ID=Zjn_sc00070.1.g00570.1.sm.mkhc:exon:7
Zjn_sc00070.1 maker exon 724106 724181 . + . ID=Zjn_sc00070.1.g00570.1.sm.mkhc:exon:8
Zjn_sc00070.1 maker exon 726115 726239 . + . ID=Zjn_sc00070.1.g00570.1.sm.mkhc:exon:9
Zjn_sc00070.1 maker exon 726338 727269 . + . ID=Zjn_sc00070.1.g00570.1.sm.mkhc:exon:10

Top