Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00069.1.g02890.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00069.1)

BLAST

TAIR10	AT1G10430.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	306	1	306	e-172	100	91.8	96.7
		Subject	306	1	306
		Annot	\| Symbols: PP2A-2 \| protein phosphatase 2A-2 \| chr1:3428705-3430437 REVERSE LENGTH=306
NR	ref\|NP_001140690.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	306	1	306	e-179	100	98.4	99.3
		Subject	306	1	306
		Annot	putative serine/threonine protein phosphatase superfamily protein isoform 1 [Zea mays] gi\|194700598\|gb\|ACF84383.1\| unknown [Zea mays] gi\|413954381\|gb\|AFW87030.1\| putative serine/threonine protein phosphatase superfamily protein isoform 1 [Zea mays] gi\|413954382\|gb\|AFW87031.1\| putative serine/threonine protein phosphatase superfamily protein isoform 2 [Zea mays]
IRGSP	Os06t0574500-01_chr06_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	306	1	306	0.0	100	96.7	99.3
		Subject	306	1	306
		Annot
Sbicolor	Sobic.010G174800.1.p\|Chr10\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	306	1	306	0.0	100	98.4	99.7
		Subject	306	1	306
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR004843	Phosphoesterase domain
Zjn_sc00069.1.g02890.1.sm.mkhc				length: 306 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0016787	hydrolase activity
HMMPfam	PF00149	Metallophos	1.1e-40	48-240
IPR006186	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
Molecular Function	GO:0016787	hydrolase activity
FPrintScan	PR00114	STPHPHTASE	7.7e-91	48-75 77-104 110-134 145-171 174-201 230-250 252-268
HMMSmart	SM00156	Protein	8.4e-154	20-290
PatternScan	PS00125	SER_THR_PHOSPHATASE	NA	111-116
no_ID
Gene3D	G3DSA:3.60.21.10	no description	2.7e-141	4-302
HMMPanther	PTHR11668	SERINE/THREONINE	4.5e-238	6-306
HMMPanther	PTHR11668:SF21	SERINE/THREONINE	4.5e-238	6-306
superfamily	SSF56300	Metallo-dependent	4.1e-115	4-306

Pseudomolecule

Chromosome	Start	End	Strand
20	13239097	13243200	+

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00069.1	maker	exon	1327403	1327802	.	-	.	ID=Zjn_sc00069.1.g02890.1.sm.mkhc:exon:6
Zjn_sc00069.1	maker	exon	1328520	1328711	.	-	.	ID=Zjn_sc00069.1.g02890.1.sm.mkhc:exon:5
Zjn_sc00069.1	maker	exon	1329048	1329125	.	-	.	ID=Zjn_sc00069.1.g02890.1.sm.mkhc:exon:4
Zjn_sc00069.1	maker	exon	1329216	1329324	.	-	.	ID=Zjn_sc00069.1.g02890.1.sm.mkhc:exon:3
Zjn_sc00069.1	maker	exon	1330571	1330685	.	-	.	ID=Zjn_sc00069.1.g02890.1.sm.mkhc:exon:2
Zjn_sc00069.1	maker	exon	1331254	1331506	.	-	.	ID=Zjn_sc00069.1.g02890.1.sm.mkhc:exon:1