Z. japonica Nagirizaki
Zjn_sc00069.1.g02790.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G38130.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 501 8 490 0.0 100 71.9 81.4
Subject 501 4 490
Annot | Symbols: HD1, ATHD1, HDA1, RPD3A, HDA19, ATHDA19 | histone deacetylase 1 | chr4:17896493-17899057 REVERSE LENGTH=501
NR ref|XP_004966013.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 501 1 501 0.0 103.4 89.4 92
Subject 518 1 518
Annot PREDICTED: probable histone deacetylase 19 [Setaria italica]
IRGSP Os06t0583400-01_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 501 1 500 0.0 103.4 88.6 92.8
Subject 518 1 517
Annot
Sbicolor Sobic.010G176300.1.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 501 1 501 0.0 113 88.4 91.6
Subject 566 49 566
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00069.1.g02790.1.sm.mkhc length: 501 aa.
IPR000286 Histone deacetylase superfamily
method AccNumber shortName E-value location
FPrintScan PR01270 HDASUPER 1.5e-23 149-172
181-196
266-276
HMMPanther PTHR10625 HISTONE 5.5e-278 20-478
IPR003084 Histone deacetylase
Molecular Function GO:0004407 histone deacetylase activity    
Biological Process GO:0016575 histone deacetylation    
FPrintScan PR01271 HISDACETLASE 2e-58 43-60
76-94
107-124
128-148
168-184
227-240
244-262
HMMPIR PIRSF037913 Histone 6.3e-285 20-427
IPR023801 Histone deacetylase domain
Gene3D G3DSA:3.40.800.20 no description 2.6e-118 19-384
HMMPfam PF00850 Hist_deacetyl 9.6e-75 38-317
no_ID  
HMMPanther PTHR10625:SF28 HISTONE 5.5e-278 20-478
Seg seg seg NA 307-314
superfamily SSF52768 Arginase/deacetylase 3.1e-122 22-375
Pseudomolecule
Chromosome Start End Strand
201331314113318289-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00069.1 maker exon 1252314 1252853 . + . ID=Zjn_sc00069.1.g02790.1.sm.mkhc:exon:1
Zjn_sc00069.1 maker exon 1252944 1253351 . + . ID=Zjn_sc00069.1.g02790.1.sm.mkhc:exon:2
Zjn_sc00069.1 maker exon 1253959 1254189 . + . ID=Zjn_sc00069.1.g02790.1.sm.mkhc:exon:3
Zjn_sc00069.1 maker exon 1255043 1255134 . + . ID=Zjn_sc00069.1.g02790.1.sm.mkhc:exon:4
Zjn_sc00069.1 maker exon 1255182 1255296 . + . ID=Zjn_sc00069.1.g02790.1.sm.mkhc:exon:5
Zjn_sc00069.1 maker exon 1256525 1256536 . + . ID=Zjn_sc00069.1.g02790.1.sm.mkhc:exon:6
Zjn_sc00069.1 maker exon 1256755 1257462 . + . ID=Zjn_sc00069.1.g02790.1.sm.mkhc:exon:7

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