Z. japonica Nagirizaki
Zjn_sc00069.1.g02440.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G04250.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 248 17 194 8e-25 92.3 29.8 42.7
Subject 229 7 196
Annot | Symbols: AXR3, IAA17 | AUX/IAA transcriptional regulator family protein | chr1:1136382-1138340 FORWARD LENGTH=229
NR gb|EMS51633.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 248 1 195 1e-57 79 53.6 56.9
Subject 196 1 154
Annot Auxin-responsive protein IAA23 [Triticum urartu]
IRGSP Os06t0597000-01_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 248 1 195 4e-48 77.8 49.6 53.6
Subject 193 1 166
Annot
Sbicolor Sobic.010G180600.1.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 248 16 198 9e-51 75 48.4 50
Subject 186 18 162
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00069.1.g02440.1.sm.mkhc length: 248 aa.
IPR003311 AUX/IAA protein
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02309 AUX_IAA 4.2e-39 67-195
IPR011525 Aux/IAA-ARF-dimerisation
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 19.514 115-195
no_ID  
HMMPanther PTHR31734 FAMILY 3.8e-58 2-194
Seg seg seg NA 2-15
17-28
56-69
superfamily SSF54277 CAD 4.2e-12 102-195
Pseudomolecule
Chromosome Start End Strand
201346029513461452+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00069.1 maker exon 1109151 1109270 . - . ID=Zjn_sc00069.1.g02440.1.sm.mkhc:exon:4
Zjn_sc00069.1 maker exon 1109392 1109434 . - . ID=Zjn_sc00069.1.g02440.1.sm.mkhc:exon:3
Zjn_sc00069.1 maker exon 1109694 1110119 . - . ID=Zjn_sc00069.1.g02440.1.sm.mkhc:exon:2
Zjn_sc00069.1 maker exon 1110151 1110308 . - . ID=Zjn_sc00069.1.g02440.1.sm.mkhc:exon:1

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