Z. japonica Nagirizaki
Zjn_sc00069.1.g01100.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G38530.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 487 22 487 0.0 103.9 72.3 83.4
Subject 506 35 505
Annot | Symbols: TSBtype2 | tryptophan synthase beta type 2 | chr5:15424097-15426294 FORWARD LENGTH=506
NR ref|XP_004965819.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 487 8 487 0.0 102.7 91.6 93.8
Subject 500 22 500
Annot PREDICTED: tryptophan synthase beta chain 1 isoform X1 [Setaria italica]
IRGSP Os06t0632200-02_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 487 4 487 0.0 100 85 90.1
Subject 487 10 487
Annot
Sbicolor Sobic.010G198000.1.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 487 7 487 0.0 101.4 89.9 94.3
Subject 494 14 494
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00069.1.g01100.1.am.mkhc length: 487 aa.
IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily
method AccNumber shortName E-value location
HMMPfam PF00291 PALP 5.2e-39 113-450
superfamily SSF53686 Tryptophan 4e-121 62-463
IPR006316 Tryptophan synthase, beta chain-like
Biological Process GO:0000162 tryptophan biosynthetic process    
Molecular Function GO:0004834 tryptophan synthase activity    
Molecular Function GO:0030170 pyridoxal phosphate binding    
HMMPanther PTHR10314:SF21 TRYPTOPHAN 1.5e-257 32-469
HMMTigr TIGR01415 trpB_rel: 5.9e-194 49-465
IPR023026 Tryptophan synthase beta chain/beta chain-like
Biological Process GO:0000162 tryptophan biosynthetic process    
Molecular Function GO:0004834 tryptophan synthase activity    
HAMAP MF_00133 Trp_synth_beta 39.065 57-463
no_ID  
Gene3D G3DSA:3.40.50.1100 no description 4.2e-55 164-251
252-468
HMMPanther PTHR10314 SER/THR 1.5e-257 32-469
Seg seg seg NA 23-35
64-78
177-189
Pseudomolecule
Chromosome Start End Strand
201403208614034064-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00069.1 maker exon 536539 536897 . + . ID=Zjn_sc00069.1.g01100.1.am.mkhc:exon:1
Zjn_sc00069.1 maker exon 537001 537755 . + . ID=Zjn_sc00069.1.g01100.1.am.mkhc:exon:2
Zjn_sc00069.1 maker exon 537847 537945 . + . ID=Zjn_sc00069.1.g01100.1.am.mkhc:exon:3
Zjn_sc00069.1 maker exon 538057 538517 . + . ID=Zjn_sc00069.1.g01100.1.am.mkhc:exon:4

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