Z. japonica Nagirizaki
Zjn_sc00069.1.g00390.1.sm.mk
Sequence
-
BLAST
| TAIR10 |
AT2G25180.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
314 |
40 |
133 |
2e-20 |
189.8 |
14 |
20.7 |
| Subject |
596 |
2 |
91 |
|
| Annot |
| Symbols: ARR12, RR12 | response regulator 12 | chr2:10724490-10726961 REVERSE LENGTH=596 |
| NR |
ref|XP_004967181.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
314 |
47 |
292 |
1e-29 |
215.9 |
38.2 |
51 |
| Subject |
678 |
2 |
369 |
|
| Annot |
PREDICTED: two-component response regulator ARR10-like [Setaria italica] |
| IRGSP |
Os02t0182100-01_chr02_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
314 |
49 |
200 |
1e-20 |
199.4 |
22.3 |
30.3 |
| Subject |
626 |
23 |
238 |
|
| Annot |
|
| Sbicolor |
Sobic.010G191900.1.p|Chr10|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
314 |
48 |
296 |
4e-37 |
213.7 |
37.9 |
53.2 |
| Subject |
671 |
3 |
374 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00069.1.g00390.1.sm.mk |
length: 314 aa. |
| IPR001789 |
Signal transduction response regulator, receiver domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0000156 |
phosphorelay response regulator activity |
|
|
| Biological Process |
GO:0000160 |
phosphorelay signal transduction system |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| HMMPfam |
PF00072 |
Response_reg |
1.1e-10 |
57-124 |
| HMMSmart |
SM00448 |
cheY-homologous |
0.00047 |
55-214 |
| ProfileScan |
PS50110 |
RESPONSE_REGULATORY |
16.821 |
56-133 |
| IPR009057 |
Homeodomain-like |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Gene3D |
G3DSA:1.10.10.60 |
no description |
0.00048 |
174-202 |
| IPR011006 |
CheY-like superfamily |
| superfamily |
SSF52172 |
CheY-like |
2.5e-17 |
52-126 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.2300 |
no description |
4.3e-18 |
53-126 |
| HMMPanther |
PTHR26402 |
RESPONSE |
1.7e-14 |
44-126 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 20 | 14364106 | 14367379 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00069.1 |
maker_non_over |
exon |
203224 |
203280 |
. |
- |
. |
ID=Zjn_sc00069.1.g00390.1.sm.mk:exon:7 |
| Zjn_sc00069.1 |
maker_non_over |
exon |
203316 |
203608 |
. |
- |
. |
ID=Zjn_sc00069.1.g00390.1.sm.mk:exon:6 |
| Zjn_sc00069.1 |
maker_non_over |
exon |
204370 |
204565 |
. |
- |
. |
ID=Zjn_sc00069.1.g00390.1.sm.mk:exon:5 |
| Zjn_sc00069.1 |
maker_non_over |
exon |
205608 |
205765 |
. |
- |
. |
ID=Zjn_sc00069.1.g00390.1.sm.mk:exon:4 |
| Zjn_sc00069.1 |
maker_non_over |
exon |
205864 |
205980 |
. |
- |
. |
ID=Zjn_sc00069.1.g00390.1.sm.mk:exon:3 |
| Zjn_sc00069.1 |
maker_non_over |
exon |
206150 |
206166 |
. |
- |
. |
ID=Zjn_sc00069.1.g00390.1.sm.mk:exon:2 |
| Zjn_sc00069.1 |
maker_non_over |
exon |
206391 |
206497 |
. |
- |
. |
ID=Zjn_sc00069.1.g00390.1.sm.mk:exon:1 |