Z. japonica Nagirizaki
Zjn_sc00069.1.g00030.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G21240.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 574 6 572 0.0 96.9 59.4 71.8
Subject 556 9 554
Annot | Symbols: 4CL2, AT4CL2 | 4-coumarate:CoA ligase 2 | chr3:7454497-7457314 REVERSE LENGTH=556
NR ref|XP_004965684.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 574 1 574 0.0 96.5 82.8 87.3
Subject 554 1 546
Annot PREDICTED: probable 4-coumarate--CoA ligase 4 [Setaria italica]
IRGSP Os06t0656500-01_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 574 18 573 0.0 97.4 78.6 84.7
Subject 559 17 550
Annot
Sbicolor Sobic.010G214900.1.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 574 1 573 0.0 97 82.6 86.6
Subject 557 1 548
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00069.1.g00030.1.sm.mkhc length: 574 aa.
IPR000873 AMP-dependent synthetase/ligase
method AccNumber shortName E-value location
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
HMMPfam PF00501 AMP-binding 1.1e-96 48-494
IPR020845 AMP-binding, conserved site
PatternScan PS00455 AMP_BINDING NA 196-207
IPR025110 AMP-binding enzyme C-terminal domain
HMMPfam PF13193 AMP-binding_C 2.7e-08 503-558
no_ID  
Gene3D G3DSA:2.30.38.10 no description 1.3e-28 410-485
Gene3D G3DSA:3.30.300.30 no description 0.00025 491-536
539-569
Gene3D G3DSA:3.40.50.980 no description 2.8e-41 44-201
273-398
HMMPanther PTHR24096 FAMILY 1.4e-226 14-569
HMMPanther PTHR24096:SF16 SUBFAMILY 1.4e-226 14-569
Seg seg seg NA 8-16
68-85
103-115
154-166
182-194
240-261
superfamily SSF56801 Acetyl-CoA 8.8e-150 6-571
Pseudomolecule
Chromosome Start End Strand
201455818414564130-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00069.1 maker exon 6473 7267 . + . ID=Zjn_sc00069.1.g00030.1.sm.mkhc:exon:1
Zjn_sc00069.1 maker exon 7422 7775 . + . ID=Zjn_sc00069.1.g00030.1.sm.mkhc:exon:2
Zjn_sc00069.1 maker exon 8333 8531 . + . ID=Zjn_sc00069.1.g00030.1.sm.mkhc:exon:3
Zjn_sc00069.1 maker exon 10100 10313 . + . ID=Zjn_sc00069.1.g00030.1.sm.mkhc:exon:4
Zjn_sc00069.1 maker exon 10419 10461 . + . ID=Zjn_sc00069.1.g00030.1.sm.mkhc:exon:5
Zjn_sc00069.1 maker exon 11718 12419 . + . ID=Zjn_sc00069.1.g00030.1.sm.mkhc:exon:6

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