Z. japonica Nagirizaki
Zjn_sc00068.1.g01690.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G15210.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 186 16 99 8e-23 119.4 29 32.8
Subject 222 22 106
Annot | Symbols: ATERF-4, ERF4, RAP2.5, ATERF4 | ethylene responsive element binding factor 4 | chr3:5121472-5122140 FORWARD LENGTH=222
NR gb|EAZ38097.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 186 1 186 4e-58 101.1 79.6 83.9
Subject 188 1 188
Annot hypothetical protein OsJ_22449 [Oryza sativa Japonica Group]
IRGSP Os06t0691100-00_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 186 1 186 3e-56 101.1 77.4 82.3
Subject 188 1 188
Annot
Sbicolor Sobic.010G240900.1.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 186 1 186 8e-58 104.8 88.2 89.8
Subject 195 1 195
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00068.1.g01690.1.sm.mk length: 186 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 7.5e-08 19-30
41-57
Gene3D G3DSA:3.30.730.10 no description 1.3e-28 18-76
HMMPfam PF00847 AP2 3.1e-16 18-67
HMMSmart SM00380 DNA-binding 6.9e-33 18-81
ProfileScan PS51032 AP2_ERF 22.168 18-75
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 2.4e-22 17-78
no_ID  
HMMPanther PTHR31677 FAMILY 1.1e-29 16-124
Seg seg seg NA 6-15
18-30
51-62
75-102
151-178
Pseudomolecule
Chromosome Start End Strand
201532256715323127+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00068.1 maker_non_over exon 741965 742525 . + . ID=Zjn_sc00068.1.g01690.1.sm.mk:exon:1

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