Z. japonica Nagirizaki
Zjn_sc00068.1.g01470.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G30080.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 685 7 684 0.0 97.8 58.8 68.9
Subject 670 12 669
Annot | Symbols: ARF16 | auxin response factor 16 | chr4:14703369-14705564 REVERSE LENGTH=670
NR ref|XP_004966254.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 685 1 683 0.0 100.1 89.2 92.4
Subject 686 10 684
Annot PREDICTED: auxin response factor 18 [Setaria italica] gi|514767484|ref|XP_004966255.1| PREDICTED: auxin response factor 18 [Setaria italica] gi|514767488|ref|XP_004966256.1| PREDICTED: auxin response factor 18 [Setaria italica]
IRGSP Os06t0685700-01_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 685 2 683 0.0 102.2 86.6 90.9
Subject 700 11 698
Annot
Sbicolor Sobic.010G236300.1.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 685 1 677 0.0 103.5 87.7 91.5
Subject 709 10 705
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00068.1.g01470.1.sm.mkhc length: 685 aa.
IPR003311 AUX/IAA protein
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02309 AUX_IAA 1.5e-09 548-676
IPR003340 B3 DNA binding domain
Molecular Function GO:0003677 DNA binding    
HMMPfam PF02362 B3 1.5e-21 114-215
HMMSmart SM01019 B3 1.7e-21 114-216
ProfileScan PS50863 B3 13.084 114-216
IPR010525 Auxin response factor
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Biological Process GO:0009725 response to hormone stimulus    
HMMPfam PF06507 Auxin_resp 8.8e-32 273-356
IPR011525 Aux/IAA-ARF-dimerisation
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 22.803 600-678
IPR015300 DNA-binding pseudobarrel domain
Gene3D G3DSA:2.40.330.10 no description 1.4e-36 106-219
superfamily SSF101936 DNA-binding 1.5e-29 96-215
no_ID  
HMMPanther PTHR31384 FAMILY 2.3e-188 8-501
Seg seg seg NA 92-112
211-239
261-274
Pseudomolecule
Chromosome Start End Strand
201523438315237463+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00068.1 maker exon 653781 654848 . + . ID=Zjn_sc00068.1.g01470.1.sm.mkhc:exon:1
Zjn_sc00068.1 maker exon 654971 655890 . + . ID=Zjn_sc00068.1.g01470.1.sm.mkhc:exon:2
Zjn_sc00068.1 maker exon 656204 656861 . + . ID=Zjn_sc00068.1.g01470.1.sm.mkhc:exon:3

Top