Z. japonica Nagirizaki
Zjn_sc00068.1.g01050.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT1G30330.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
312 |
60 |
165 |
5e-55 |
299 |
31.1 |
31.4 |
| Subject |
933 |
281 |
386 |
|
| Annot |
| Symbols: ARF6 | auxin response factor 6 | chr1:10686125-10690036 REVERSE LENGTH=933 |
| NR |
ref|XP_006656378.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
312 |
165 |
312 |
4e-73 |
293.6 |
44.9 |
45.5 |
| Subject |
916 |
768 |
916 |
|
| Annot |
PREDICTED: auxin response factor 17-like [Oryza brachyantha] |
| IRGSP |
Os06t0677800-01_chr06_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
312 |
165 |
312 |
5e-76 |
293.9 |
44.9 |
45.5 |
| Subject |
917 |
769 |
917 |
|
| Annot |
|
| Sbicolor |
Sobic.010G229000.1.p|Chr10|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
312 |
165 |
312 |
3e-75 |
294.6 |
44.9 |
45.8 |
| Subject |
919 |
770 |
919 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00068.1.g01050.1.sm.mkhc |
length: 312 aa. |
| IPR003311 |
AUX/IAA protein |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0005634 |
nucleus |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| HMMPfam |
PF02309 |
AUX_IAA |
6.9e-22 |
174-270 |
| IPR010525 |
Auxin response factor |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Cellular Component |
GO:0005634 |
nucleus |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| Biological Process |
GO:0009725 |
response to hormone stimulus |
|
|
| HMMPfam |
PF06507 |
Auxin_resp |
2e-20 |
63-115 |
| IPR011525 |
Aux/IAA-ARF-dimerisation |
| Molecular Function |
GO:0046983 |
protein dimerization activity |
|
|
| ProfileScan |
PS50962 |
IAA_ARF |
24.602 |
182-264 |
| no_ID |
|
| HMMPanther |
PTHR31384 |
FAMILY |
9.8e-44 |
63-168 |
| Seg |
seg |
seg |
NA |
206-222 |
| superfamily |
SSF54277 |
CAD |
4.1e-08 |
169-262 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 20 | 15047728 | 15053077 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00068.1 |
maker |
exon |
467126 |
467149 |
. |
- |
. |
ID=Zjn_sc00068.1.g01050.1.sm.mkhc:exon:10 |
| Zjn_sc00068.1 |
maker |
exon |
467171 |
467375 |
. |
- |
. |
ID=Zjn_sc00068.1.g01050.1.sm.mkhc:exon:9 |
| Zjn_sc00068.1 |
maker |
exon |
467458 |
467648 |
. |
- |
. |
ID=Zjn_sc00068.1.g01050.1.sm.mkhc:exon:8 |
| Zjn_sc00068.1 |
maker |
exon |
467769 |
467830 |
. |
- |
. |
ID=Zjn_sc00068.1.g01050.1.sm.mkhc:exon:7 |
| Zjn_sc00068.1 |
maker |
exon |
469062 |
469209 |
. |
- |
. |
ID=Zjn_sc00068.1.g01050.1.sm.mkhc:exon:6 |
| Zjn_sc00068.1 |
maker |
exon |
469344 |
469419 |
. |
- |
. |
ID=Zjn_sc00068.1.g01050.1.sm.mkhc:exon:5 |
| Zjn_sc00068.1 |
maker |
exon |
469687 |
469763 |
. |
- |
. |
ID=Zjn_sc00068.1.g01050.1.sm.mkhc:exon:4 |
| Zjn_sc00068.1 |
maker |
exon |
469795 |
469809 |
. |
- |
. |
ID=Zjn_sc00068.1.g01050.1.sm.mkhc:exon:3 |
| Zjn_sc00068.1 |
maker |
exon |
471341 |
471459 |
. |
- |
. |
ID=Zjn_sc00068.1.g01050.1.sm.mkhc:exon:2 |
| Zjn_sc00068.1 |
maker |
exon |
472044 |
472475 |
. |
- |
. |
ID=Zjn_sc00068.1.g01050.1.sm.mkhc:exon:1 |