Z. japonica Nagirizaki
Zjn_sc00067.1.g01880.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G63100.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 681 139 651 e-118 96.6 36.4 47.4
Subject 658 101 654
Annot | Symbols: | GRAS family transcription factor | chr1:23399391-23401367 REVERSE LENGTH=658
NR ref|XP_004964401.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 681 62 681 0.0 89.7 74.9 78.9
Subject 611 1 611
Annot PREDICTED: scarecrow-like protein 28 [Setaria italica]
IRGSP Os06t0127800-01_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 681 62 681 0.0 90.6 72.8 78.1
Subject 617 1 617
Annot
Sbicolor Sobic.010G017400.1.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 681 62 681 0.0 91.6 74.2 78.7
Subject 624 1 624
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00067.1.g01880.1.sm.mk length: 681 aa.
IPR005202 Transcription factor GRAS
method AccNumber shortName E-value location
HMMPfam PF03514 GRAS 4.5e-116 282-651
ProfileScan PS50985 GRAS 54.501 255-629
no_ID  
Coil coil coiled-coil NA 18-39
HMMPanther PTHR31636 FAMILY 3.6e-128 276-655
Seg seg seg NA 11-22
31-44
95-114
199-207
223-232
239-255
530-554
661-681
Pseudomolecule
Chromosome Start End Strand
1911872471189627-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00067.1 maker_non_over exon 957903 959859 . - . ID=Zjn_sc00067.1.g01880.1.sm.mk:exon:2
Zjn_sc00067.1 maker_non_over exon 960195 960283 . - . ID=Zjn_sc00067.1.g01880.1.sm.mk:exon:1

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