Z. japonica Nagirizaki
Zjn_sc00067.1.g01840.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G25480.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 245 16 84 1e-25 88.2 21.6 24.9
Subject 216 23 91
Annot | Symbols: DREB1A, CBF3, ATCBF3 | dehydration response element B1A | chr4:13018353-13019003 REVERSE LENGTH=216
NR ref|XP_004964394.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 245 1 186 4e-39 109.8 56.7 59.6
Subject 269 35 264
Annot PREDICTED: dehydration-responsive element-binding protein 1C-like [Setaria italica]
IRGSP Os06t0127100-01_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 245 7 145 8e-33 87.3 41.2 43.3
Subject 214 1 174
Annot
Sbicolor Sobic.010G016500.1.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 245 17 176 8e-33 101.6 41.2 47.8
Subject 249 32 241
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00067.1.g01840.1.am.mk length: 245 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 1.3e-05 43-54
66-82
Gene3D G3DSA:3.30.730.10 no description 1.2e-20 42-88
HMMPfam PF00847 AP2 1.3e-13 41-89
HMMSmart SM00380 DNA-binding 9.2e-13 42-109
ProfileScan PS51032 AP2_ERF 16.937 42-84
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 1.8e-14 41-84
no_ID  
HMMPanther PTHR31839 FAMILY 3.4e-44 15-84
HMMPanther PTHR31839:SF0 SUBFAMILY 3.4e-44 15-84
Seg seg seg NA 74-92
94-119
169-185
227-242
Pseudomolecule
Chromosome Start End Strand
1911727371175083+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00067.1 maker_non_over exon 943393 943644 . + . ID=Zjn_sc00067.1.g01840.1.am.mk:exon:1
Zjn_sc00067.1 maker_non_over exon 944077 944376 . + . ID=Zjn_sc00067.1.g01840.1.am.mk:exon:2
Zjn_sc00067.1 maker_non_over exon 945368 945412 . + . ID=Zjn_sc00067.1.g01840.1.am.mk:exon:3
Zjn_sc00067.1 maker_non_over exon 945599 945739 . + . ID=Zjn_sc00067.1.g01840.1.am.mk:exon:4

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