Z. japonica Nagirizaki
Zjn_sc00067.1.g01660.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G37740.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 341 23 168 7e-33 156.9 21.1 26.7
Subject 535 165 296
Annot | Symbols: AtGRF2, GRF2 | growth-regulating factor 2 | chr4:17725533-17727609 REVERSE LENGTH=535
NR ref|NP_001056618.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 341 1 341 e-145 102.1 79.8 87.7
Subject 348 2 348
Annot Os06g0116200 [Oryza sativa Japonica Group] gi|75120357|sp|Q6AWY4.1|GRF5_ORYSJ RecName: Full=Growth-regulating factor 5; Short=OsGRF5; AltName: Full=Transcription activator GRF5 gi|51039839|tpg|DAA05209.1| TPA_exp: growth-regulating factor 5 [Oryza sativa (japonica cultivar-group)] [Oryza sativa Japonica Group] gi|55296197|dbj|BAD67915.1| putative growth-regulating factor 1 [Oryza sativa Japonica Group] gi|113594658|dbj|BAF18532.1| Os06g0116200 [Oryza sativa Japonica Group] gi|215737190|dbj|BAG96119.1| unnamed protein product [Oryza sativa Japonica Group] gi|218197454|gb|EEC79881.1| hypothetical protein OsI_21387 [Oryza sativa Indica Group]
IRGSP Os04t0600900-02_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 341 23 338 9e-61 112.6 45.2 54.8
Subject 384 54 367
Annot
Sbicolor Sobic.010G013500.1.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 341 19 341 e-125 143.4 76.8 81.8
Subject 489 148 489
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00067.1.g01660.1.sm.mkhc length: 341 aa.
IPR014977 WRC
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF08879 WRC 4.4e-22 92-136
IPR014978 Glutamine-Leucine-Glutamine, QLQ
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides    
HMMPfam PF08880 QLQ 2.5e-17 22-56
HMMSmart SM00951 no description 2.5e-11 21-57
no_ID  
HMMPanther PTHR31602 FAMILY 3.1e-78 10-338
Seg seg seg NA 3-8
25-36
45-57
59-80
172-184
223-235
Pseudomolecule
Chromosome Start End Strand
1911112601113642-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00067.1 maker exon 881916 881923 . - . ID=Zjn_sc00067.1.g01660.1.sm.mkhc:exon:4
Zjn_sc00067.1 maker exon 882041 882477 . - . ID=Zjn_sc00067.1.g01660.1.sm.mkhc:exon:3
Zjn_sc00067.1 maker exon 883096 883435 . - . ID=Zjn_sc00067.1.g01660.1.sm.mkhc:exon:2
Zjn_sc00067.1 maker exon 883879 884298 . - . ID=Zjn_sc00067.1.g01660.1.sm.mkhc:exon:1

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