Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00067.1.g01440.1.am.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00067.1)

BLAST

TAIR10	AT3G03050.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	1172	12	1172	0.0	97.7	79.2	87.4
		Subject	1145	6	1145
		Annot	\| Symbols: CSLD3, KJK, ATCSLD3 \| cellulose synthase-like D3 \| chr3:687873-691629 FORWARD LENGTH=1145
NR	ref\|XP_004964325.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	1172	1	1172	0.0	100.3	94	97.2
		Subject	1175	1	1175
		Annot	PREDICTED: cellulose synthase-like protein D2 [Setaria italica]
IRGSP	Os06t0111800-02_chr06_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	1172	1	1172	0.0	99.8	92.2	95.6
		Subject	1170	1	1170
		Annot
Sbicolor	Sobic.010G008600.1.p\|Chr10\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	1172	1	1172	0.0	100.6	92.9	95.8
		Subject	1179	1	1179
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR005150	Cellulose synthase
Zjn_sc00067.1.g01440.1.am.mkhc				length: 1172 aa.
method	AccNumber	shortName	E-value	location
Cellular Component	GO:0016020	membrane
Molecular Function	GO:0016760	cellulose synthase (UDP-forming) activity
Biological Process	GO:0030244	cellulose biosynthetic process
HMMPfam	PF03552	Cellulose_synt	0	402-1163
IPR013083	Zinc finger, RING/FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	no description	8.4e-18	130-203
no_ID
HMMPanther	PTHR32287	FAMILY	0	154-1172
HMMPanther	PTHR32287:SF8	SUBFAMILY	0	154-1172
HMMPfam	PF14570	zf-RING_4	4.4e-16	148-197
Seg	seg	seg	NA	25-37 207-227 278-284
superfamily	SSF53448	Nucleotide-diphospho-sugar	7.5e-07	416-967
superfamily	SSF57850	RING/U-box	6.8e-13	128-221

Pseudomolecule

Chromosome	Start	End	Strand
19	1022421	1026538	+

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00067.1	maker	exon	793077	794029	.	+	.	ID=Zjn_sc00067.1.g01440.1.am.mkhc:exon:1
Zjn_sc00067.1	maker	exon	794151	794958	.	+	.	ID=Zjn_sc00067.1.g01440.1.am.mkhc:exon:2
Zjn_sc00067.1	maker	exon	795190	797194	.	+	.	ID=Zjn_sc00067.1.g01440.1.am.mkhc:exon:3