Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00067.1.g01410.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00067.1)

BLAST

TAIR10	AT4G34840.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	182	19	182	2e-40	139.6	52.2	69.2
		Subject	254	13	254
		Annot	\| Symbols: ATMTN2, ATMTAN2, MTN2, MTAN2 \| Phosphorylase superfamily protein \| chr4:16606299-16607748 FORWARD LENGTH=254
NR	ref\|NP_001056592.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	182	1	182	2e-60	142.3	78.6	86.3
		Subject	259	1	259
		Annot	Os06g0112200 [Oryza sativa Japonica Group] gi\|7363290\|dbj\|BAA93034.1\| methylthioadenosine/S-adenosyl homocysteine nucleosidase [Oryza sativa Japonica Group] gi\|32352128\|dbj\|BAC78557.1\| hypothetical protein [Oryza sativa Japonica Group] gi\|113594632\|dbj\|BAF18506.1\| Os06g0112200 [Oryza sativa Japonica Group] gi\|125595804\|gb\|EAZ35584.1\| hypothetical protein OsJ_19870 [Oryza sativa Japonica Group] gi\|215694661\|dbj\|BAG89852.1\| unnamed protein product [Oryza sativa Japonica Group] gi\|215740802\|dbj\|BAG96958.1\| unnamed protein product [Oryza sativa Japonica Group]
IRGSP	Os06t0112200-01_chr06_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	182	1	182	3e-63	142.3	78.6	86.3
		Subject	259	1	259
		Annot
Sbicolor	Sobic.007G193200.1.p\|Chr07\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	182	13	182	2e-62	137.9	75.8	82.4
		Subject	251	2	251
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR000845	Nucleoside phosphorylase domain
Zjn_sc00067.1.g01410.1.sm.mkhc				length: 182 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003824	catalytic activity
Biological Process	GO:0009116	nucleoside metabolic process
Gene3D	G3DSA:3.40.50.1580	no description	1.2e-12	18-93 118-181
IPR018017	Nucleoside phosphorylase
HMMPanther	PTHR21234	PURINE	1.5e-36	19-178
no_ID
HMMPanther	PTHR21234:SF5	MTA/SAH	1.5e-36	19-178
superfamily	SSF53167	Purine	8e-10	9-167

Pseudomolecule

Chromosome	Start	End	Strand
19	1011905	1014595	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00067.1	maker	exon	782561	782836	.	-	.	ID=Zjn_sc00067.1.g01410.1.sm.mkhc:exon:6
Zjn_sc00067.1	maker	exon	783856	783930	.	-	.	ID=Zjn_sc00067.1.g01410.1.sm.mkhc:exon:5
Zjn_sc00067.1	maker	exon	784154	784188	.	-	.	ID=Zjn_sc00067.1.g01410.1.sm.mkhc:exon:4
Zjn_sc00067.1	maker	exon	784368	784459	.	-	.	ID=Zjn_sc00067.1.g01410.1.sm.mkhc:exon:3
Zjn_sc00067.1	maker	exon	784950	785019	.	-	.	ID=Zjn_sc00067.1.g01410.1.sm.mkhc:exon:2
Zjn_sc00067.1	maker	exon	785123	785251	.	-	.	ID=Zjn_sc00067.1.g01410.1.sm.mkhc:exon:1