Z. japonica Nagirizaki
Zjn_sc00066.1.g03080.1.am.mkhc
Sequence
-
BLAST
| TAIR10 |
AT1G77470.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
235 |
1 |
172 |
2e-60 |
157 |
50.2 |
56.6 |
| Subject |
369 |
1 |
174 |
|
| Annot |
| Symbols: RFC3, RFC5 | replication factor C subunit 3 | chr1:29112194-29114323 REVERSE LENGTH=369 |
| NR |
ref|XP_003570529.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
235 |
1 |
172 |
2e-72 |
152.3 |
59.1 |
63 |
| Subject |
358 |
1 |
171 |
|
| Annot |
PREDICTED: replication factor C subunit 3 [Brachypodium distachyon] |
| IRGSP |
Os02t0775200-01_chr02_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
235 |
1 |
172 |
2e-72 |
153.6 |
63 |
65.1 |
| Subject |
361 |
1 |
174 |
|
| Annot |
|
| Sbicolor |
Sobic.004G315500.1.p|Chr04|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
235 |
1 |
172 |
4e-73 |
154 |
60 |
62.6 |
| Subject |
362 |
1 |
175 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00066.1.g03080.1.am.mkhc |
length: 235 aa. |
| IPR003593 |
AAA+ ATPase domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0000166 |
nucleotide binding |
|
|
| Molecular Function |
GO:0017111 |
nucleoside-triphosphatase activity |
|
|
| HMMSmart |
SM00382 |
ATPases |
9.4e-10 |
68-234 |
| IPR003959 |
ATPase, AAA-type, core |
| Molecular Function |
GO:0005524 |
ATP binding |
|
|
| HMMPfam |
PF00004 |
AAA |
1.3e-11 |
72-157 |
| IPR013748 |
Replication factor C, C-terminal domain |
| HMMPfam |
PF08542 |
Rep_fac_C |
1.3e-12 |
154-223 |
| IPR027417 |
P-loop containing nucleoside triphosphate hydrolase |
| superfamily |
SSF52540 |
P-loop |
3e-27 |
34-179 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.272.10 |
no description |
9e-28 |
170-231 |
| Gene3D |
G3DSA:3.40.50.300 |
no description |
1.9e-42 |
37-169 |
| HMMPanther |
PTHR11669 |
REPLICATION |
4.6e-59 |
25-158 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 8 | 19674810 | 19678946 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00066.1 |
maker |
exon |
1453686 |
1453912 |
. |
+ |
. |
ID=Zjn_sc00066.1.g03080.1.am.mkhc:exon:1 |
| Zjn_sc00066.1 |
maker |
exon |
1454870 |
1455086 |
. |
+ |
. |
ID=Zjn_sc00066.1.g03080.1.am.mkhc:exon:2 |
| Zjn_sc00066.1 |
maker |
exon |
1455177 |
1455256 |
. |
+ |
. |
ID=Zjn_sc00066.1.g03080.1.am.mkhc:exon:3 |
| Zjn_sc00066.1 |
maker |
exon |
1456222 |
1456285 |
. |
+ |
. |
ID=Zjn_sc00066.1.g03080.1.am.mkhc:exon:4 |
| Zjn_sc00066.1 |
maker |
exon |
1456381 |
1456449 |
. |
+ |
. |
ID=Zjn_sc00066.1.g03080.1.am.mkhc:exon:5 |
| Zjn_sc00066.1 |
maker |
exon |
1457052 |
1457822 |
. |
+ |
. |
ID=Zjn_sc00066.1.g03080.1.am.mkhc:exon:6 |