Z. japonica Nagirizaki
Zjn_sc00066.1.g01990.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G07690.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 608 1 317 e-125 119.6 35.4 42.3
Subject 727 1 321
Annot | Symbols: MCM5 | Minichromosome maintenance (MCM2/3/5) family protein | chr2:3523379-3527388 REVERSE LENGTH=727
NR gb|EMT29045.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 608 1 608 0.0 119.4 91.6 96.1
Subject 726 1 726
Annot DNA replication licensing factor mcm5 [Aegilops tauschii]
IRGSP Os02t0797400-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 608 1 317 0.0 119.9 49 50.8
Subject 729 1 319
Annot
Sbicolor Sobic.004G331600.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 608 1 317 0.0 119.9 49.5 50.8
Subject 729 1 319
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00066.1.g01990.1.sm.mk length: 608 aa.
IPR001208 Mini-chromosome maintenance, DNA-dependent ATPase
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006260 DNA replication    
FPrintScan PR01657 MCMFAMILY 1.5e-19 354-368
382-395
406-418
HMMPfam PF00493 MCM 2.5e-56 311-423
HMMSmart SM00350 minichromosome 1.4e-143 132-559
ProfileScan PS50051 MCM_2 53.623 311-418
IPR008048 DNA replication licensing factor Mcm
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003678 DNA helicase activity    
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006270 DNA replication initiation    
Cellular Component GO:0042555 MCM complex    
FPrintScan PR01661 MCMPROTEIN5 1.6e-11 137-152
163-175
284-296
IPR012340 Nucleic acid-binding, OB-fold
Gene3D G3DSA:2.40.50.140 no description 1.8e-20 221-295
superfamily SSF50249 Nucleic 1.3e-56 35-291
IPR018525 Mini-chromosome maintenance, conserved site
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006260 DNA replication    
PatternScan PS00847 MCM_1 NA 362-370
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 3.3e-22 297-553
IPR027925 MCM N-terminal domain
HMMPfam PF14551 MCM_N 2.1e-15 34-152
no_ID  
Coil coil coiled-coil NA 489-510
Gene3D G3DSA:3.30.1640.10 no description 7.1e-12 27-102
Gene3D G3DSA:3.40.50.300 no description 1.3e-21 322-418
HMMPanther PTHR11630 DNA 4.4e-259 1-607
HMMPanther PTHR11630:SF42 DNA 4.4e-259 1-607
Pseudomolecule
Chromosome Start End Strand
82022225020226306-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00066.1 maker_non_over exon 906326 906486 . + . ID=Zjn_sc00066.1.g01990.1.sm.mk:exon:1
Zjn_sc00066.1 maker_non_over exon 906583 906697 . + . ID=Zjn_sc00066.1.g01990.1.sm.mk:exon:2
Zjn_sc00066.1 maker_non_over exon 906768 906911 . + . ID=Zjn_sc00066.1.g01990.1.sm.mk:exon:3
Zjn_sc00066.1 maker_non_over exon 907001 907180 . + . ID=Zjn_sc00066.1.g01990.1.sm.mk:exon:4
Zjn_sc00066.1 maker_non_over exon 907479 907577 . + . ID=Zjn_sc00066.1.g01990.1.sm.mk:exon:5
Zjn_sc00066.1 maker_non_over exon 907669 907796 . + . ID=Zjn_sc00066.1.g01990.1.sm.mk:exon:6
Zjn_sc00066.1 maker_non_over exon 907880 907985 . + . ID=Zjn_sc00066.1.g01990.1.sm.mk:exon:7
Zjn_sc00066.1 maker_non_over exon 908522 908626 . + . ID=Zjn_sc00066.1.g01990.1.sm.mk:exon:8
Zjn_sc00066.1 maker_non_over exon 908711 908802 . + . ID=Zjn_sc00066.1.g01990.1.sm.mk:exon:9
Zjn_sc00066.1 maker_non_over exon 908912 909044 . + . ID=Zjn_sc00066.1.g01990.1.sm.mk:exon:10
Zjn_sc00066.1 maker_non_over exon 909212 909238 . + . ID=Zjn_sc00066.1.g01990.1.sm.mk:exon:11
Zjn_sc00066.1 maker_non_over exon 909309 909403 . + . ID=Zjn_sc00066.1.g01990.1.sm.mk:exon:12
Zjn_sc00066.1 maker_non_over exon 909478 909595 . + . ID=Zjn_sc00066.1.g01990.1.sm.mk:exon:13
Zjn_sc00066.1 maker_non_over exon 909669 909778 . + . ID=Zjn_sc00066.1.g01990.1.sm.mk:exon:14
Zjn_sc00066.1 maker_non_over exon 909892 910021 . + . ID=Zjn_sc00066.1.g01990.1.sm.mk:exon:15
Zjn_sc00066.1 maker_non_over exon 910299 910382 . + . ID=Zjn_sc00066.1.g01990.1.sm.mk:exon:16

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