Z. japonica Nagirizaki
Zjn_sc00066.1.g01480.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G23030.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 141 2 141 2e-20 123.4 39.7 53.2
Subject 174 15 150
Annot | Symbols: IAA2 | indole-3-acetic acid inducible 2 | chr3:8181069-8181685 REVERSE LENGTH=174
NR ref|XP_004954274.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 141 1 141 4e-42 124.1 78 85.8
Subject 175 1 162
Annot PREDICTED: auxin-responsive protein IAA9-like [Setaria italica]
IRGSP Os02t0805100-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 141 1 141 1e-42 129.1 72.3 85.1
Subject 182 1 169
Annot
Sbicolor Sobic.004G336500.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 141 1 141 2e-37 139.7 68.8 80.9
Subject 197 1 184
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00066.1.g01480.1.sm.mkhc length: 141 aa.
IPR003311 AUX/IAA protein
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02309 AUX_IAA 3.8e-30 47-141
IPR011525 Aux/IAA-ARF-dimerisation
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 27.058 69-141
no_ID  
HMMPanther PTHR31734 FAMILY 2.3e-17 47-141
Seg seg seg NA 20-35
superfamily SSF54277 CAD 1.2e-13 56-141
Pseudomolecule
Chromosome Start End Strand
82040321220403759+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00066.1 maker exon 728873 728967 . - . ID=Zjn_sc00066.1.g01480.1.sm.mkhc:exon:2
Zjn_sc00066.1 maker exon 729090 729420 . - . ID=Zjn_sc00066.1.g01480.1.sm.mkhc:exon:1

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