Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00066.1.g00810.1.am.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00066.1)

BLAST

TAIR10	AT2G33310.2		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	266	55	264	1e-44	92.9	39.5	49.2
		Subject	247	44	232
		Annot	\| Symbols: IAA13 \| auxin-induced protein 13 \| chr2:14114569-14115757 REVERSE LENGTH=247
NR	ref\|XP_008676802.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	266	3	263	4e-97	110.5	77.4	82.7
		Subject	294	4	275
		Annot	PREDICTED: hypothetical protein isoform X1 [Zea mays] gi\|413924061\|gb\|AFW63993.1\| hypothetical protein ZEAMMB73_893762 [Zea mays]
IRGSP	Os02t0817600-02_chr02_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	266	1	264	1e-99	105.6	76.3	80.8
		Subject	281	1	264
		Annot
Sbicolor	Sobic.004G345600.1.p\|Chr04\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	266	3	264	3e-94	111.3	82.7	88
		Subject	296	4	278
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR003311	AUX/IAA protein
Zjn_sc00066.1.g00810.1.am.mkhc				length: 266 aa.
method	AccNumber	shortName	E-value	location
Cellular Component	GO:0005634	nucleus
Biological Process	GO:0006355	regulation of transcription, DNA-dependent
HMMPfam	PF02309	AUX_IAA	5e-51	83-264
IPR011525	Aux/IAA-ARF-dimerisation
Molecular Function	GO:0046983	protein dimerization activity
ProfileScan	PS50962	IAA_ARF	32.555	164-258
no_ID
HMMPanther	PTHR31734	FAMILY	3.2e-45	113-264
Seg	seg	seg	NA	3-53 64-96 158-168
superfamily	SSF54277	CAD	1.3e-16	165-256

Pseudomolecule

Chromosome	Start	End	Strand
8	20731972	20735860	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00066.1	maker	exon	396772	397097	.	+	.	ID=Zjn_sc00066.1.g00810.1.am.mkhc:exon:1
Zjn_sc00066.1	maker	exon	397583	397881	.	+	.	ID=Zjn_sc00066.1.g00810.1.am.mkhc:exon:2
Zjn_sc00066.1	maker	exon	398194	398296	.	+	.	ID=Zjn_sc00066.1.g00810.1.am.mkhc:exon:3
Zjn_sc00066.1	maker	exon	398418	398479	.	+	.	ID=Zjn_sc00066.1.g00810.1.am.mkhc:exon:4
Zjn_sc00066.1	maker	exon	398511	398520	.	+	.	ID=Zjn_sc00066.1.g00810.1.am.mkhc:exon:5
Zjn_sc00066.1	maker	exon	398709	400660	.	+	.	ID=Zjn_sc00066.1.g00810.1.am.mkhc:exon:6