Z. japonica Nagirizaki
Zjn_sc00065.1.g01610.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G20180.3 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 771 292 767 6e-39 62 22.4 30
Subject 478 1 450
Annot | Symbols: PIL5 | phytochrome interacting factor 3-like 5 | chr2:8704276-8706538 REVERSE LENGTH=478
NR ref|XP_004982350.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 771 292 759 e-176 68.5 48.4 50.7
Subject 528 1 467
Annot PREDICTED: transcription factor PIF1-like isoform X1 [Setaria italica]
IRGSP Os12t0610200-01_chr12_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 771 292 757 4e-83 57.7 28.1 33.5
Subject 445 1 402
Annot
Sbicolor Sobic.001G158900.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 771 292 759 e-146 69.4 43.7 45.8
Subject 535 1 477
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00065.1.g01610.1.am.mk length: 771 aa.
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain
method AccNumber shortName E-value location
Molecular Function GO:0046983 protein dimerization activity    
Gene3D G3DSA:4.10.280.10 no description 8.6e-15 630-677
HMMPfam PF00010 HLH 3.1e-10 630-669
HMMSmart SM00353 helix 6.5e-13 625-674
ProfileScan PS50888 BHLH 14.526 619-668
superfamily SSF47459 HLH, 1.7e-15 630-701
IPR024097 Basic helix-loop-helix leucine zipper transcription factor
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPanther PTHR10014 BASIC 8.2e-43 535-718
IPR024102 Basic helix-loop-helix leucine zipper transcription factor, plant
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPanther PTHR10014:SF30 BASIC 8.2e-43 535-718
no_ID  
Seg seg seg NA 85-122
200-210
220-229
258-270
334-361
390-405
468-479
486-496
520-531
551-568
572-589
696-716
719-732
Pseudomolecule
Chromosome Start End Strand
159538515959205-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00065.1 maker_non_over exon 1101145 1101441 . - . ID=Zjn_sc00065.1.g01610.1.am.mk:exon:6
Zjn_sc00065.1 maker_non_over exon 1101559 1101690 . - . ID=Zjn_sc00065.1.g01610.1.am.mk:exon:5
Zjn_sc00065.1 maker_non_over exon 1101732 1102686 . - . ID=Zjn_sc00065.1.g01610.1.am.mk:exon:4
Zjn_sc00065.1 maker_non_over exon 1102779 1102842 . - . ID=Zjn_sc00065.1.g01610.1.am.mk:exon:3
Zjn_sc00065.1 maker_non_over exon 1103266 1103671 . - . ID=Zjn_sc00065.1.g01610.1.am.mk:exon:2
Zjn_sc00065.1 maker_non_over exon 1106038 1106499 . - . ID=Zjn_sc00065.1.g01610.1.am.mk:exon:1

Top