Z. japonica Nagirizaki
Zjn_sc00065.1.g01230.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G11880.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 115 4 63 8e-21 192.2 37.4 45.2
Subject 221 3 62
Annot | Symbols: AGL14 | AGAMOUS-like 14 | chr4:7143512-7147108 FORWARD LENGTH=221
NR ref|XP_002456860.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 115 1 94 1e-32 141.7 70.4 75.7
Subject 163 1 137
Annot hypothetical protein SORBIDRAFT_03g044170 [Sorghum bicolor] gi|241928835|gb|EES01980.1| hypothetical protein SORBIDRAFT_03g044170 [Sorghum bicolor]
IRGSP Os01t0922800-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 115 1 94 2e-34 142.6 68.7 75.7
Subject 164 1 137
Annot
Sbicolor Sobic.003G406800.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 115 1 94 8e-36 141.7 70.4 75.7
Subject 163 1 137
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00065.1.g01230.1.sm.mkhc length: 115 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 8e-27 4-24
24-39
39-60
HMMPfam PF00319 SRF-TF 5.1e-24 11-60
HMMSmart SM00432 no description 4.6e-32 2-61
ProfileScan PS50066 MADS_BOX_2 28.385 2-62
superfamily SSF55455 SRF-like 7.9e-25 3-95
no_ID  
HMMPanther PTHR11945 MADS 1.1e-34 4-61
HMMPanther PTHR11945:SF19 MADS 1.1e-34 4-61
Seg seg seg NA 75-87
Pseudomolecule
Chromosome Start End Strand
156615785678814-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00065.1 maker exon 808872 808934 . - . ID=Zjn_sc00065.1.g01230.1.sm.mkhc:exon:3
Zjn_sc00065.1 maker exon 817952 818048 . - . ID=Zjn_sc00065.1.g01230.1.sm.mkhc:exon:2
Zjn_sc00065.1 maker exon 825924 826108 . - . ID=Zjn_sc00065.1.g01230.1.sm.mkhc:exon:1

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