Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00065.1.g01090.1.am.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00065.1)

BLAST

TAIR10	AT1G78390.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	593	65	593	0.0	110.8	60.7	70
		Subject	657	136	655
		Annot	\| Symbols: NCED9, ATNCED9 \| nine-cis-epoxycarotenoid dioxygenase 9 \| chr1:29490895-29492868 REVERSE LENGTH=657
NR	ref\|XP_002466753.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	593	1	593	0.0	103	87.5	91.2
		Subject	611	1	611
		Annot	hypothetical protein SORBIDRAFT_01g013520 [Sorghum bicolor] gi\|241920607\|gb\|EER93751.1\| hypothetical protein SORBIDRAFT_01g013520 [Sorghum bicolor]
IRGSP	Os03t0645900-00_chr03_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	593	15	593	0.0	102.5	83.8	89
		Subject	608	31	608
		Annot
Sbicolor	Sobic.001G155300.1.p\|Chr01\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	593	1	593	0.0	103	87.5	91.2
		Subject	611	1	611
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR004294	Carotenoid oxygenase
Zjn_sc00065.1.g01090.1.am.mk				length: 593 aa.
method	AccNumber	shortName	E-value	location
HMMPanther	PTHR10543	BETA-CAROTENE	5.5e-269	52-593
HMMPfam	PF03055	RPE65	7.7e-132	114-585
no_ID
HMMPanther	PTHR10543:SF1	9-CIS-EPOXYCAROTENOID	5.5e-269	52-593
Seg	seg	seg	NA	20-33 72-88 307-318

Pseudomolecule

Chromosome	Start	End	Strand
1	5552202	5553983	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00065.1	maker_non_over	exon	699496	701277	.	-	.	ID=Zjn_sc00065.1.g01090.1.am.mk:exon:1