Z. japonica Nagirizaki
Zjn_sc00065.1.g00090.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G19640.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 149 12 131 6e-57 134.2 67.8 75.8
Subject 200 40 159
Annot | Symbols: ARA7, ARA-7, ATRABF2B, ATRAB5B, RABF2B, ATRAB-F2B, RAB-F2B | Ras-related small GTP-binding family protein | chr4:10687441-10689449 REVERSE LENGTH=200
NR ref|XP_004982225.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 149 12 131 3e-61 136.2 77.2 79.9
Subject 203 41 160
Annot PREDICTED: ras-related protein RABF2b-like [Setaria italica]
IRGSP Os12t0631100-02_chr12_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 149 12 131 6e-62 136.2 74.5 79.2
Subject 203 41 160
Annot
Sbicolor Sobic.001G143300.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 149 12 131 4e-64 136.2 76.5 79.9
Subject 203 41 160
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00065.1.g00090.1.sm.mkhc length: 149 aa.
IPR001806 Small GTPase superfamily
method AccNumber shortName E-value location
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
FPrintScan PR00449 RASTRNSFRMNG 2e-14 24-46
86-99
121-143
HMMPfam PF00071 Ras 1.6e-41 11-132
IPR003578 Small GTPase superfamily, Rho type
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005622 intracellular    
Biological Process GO:0007264 small GTPase mediated signal transduction    
HMMSmart SM00174 Rho 3.1e-07 20-136
IPR003579 Small GTPase superfamily, Rab type
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
Biological Process GO:0015031 protein transport    
HMMSmart SM00175 Rab 7.9e-43 12-143
IPR005225 Small GTP-binding protein domain
Molecular Function GO:0005525 GTP binding    
HMMTigr TIGR00231 small_GTP: 1.4e-17 12-132
IPR020849 Small GTPase superfamily, Ras type
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Biological Process GO:0007165 signal transduction    
Cellular Component GO:0016020 membrane    
HMMSmart SM00173 Ras 3.7e-07 1-146
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 9.6e-39 12-131
no_ID  
Gene3D G3DSA:3.40.50.300 no description 1.9e-44 12-131
HMMPanther PTHR24073 FAMILY 2.1e-74 12-131
HMMPanther PTHR24073:SF132SUBFAMILY NOT 2.1e-74 12-131
ProfileScan PS51419 RAB 22.975 1-149
Pseudomolecule
Chromosome Start End Strand
149043344911264-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00065.1 maker exon 51628 51684 . - . ID=Zjn_sc00065.1.g00090.1.sm.mkhc:exon:7
Zjn_sc00065.1 maker exon 55919 55987 . - . ID=Zjn_sc00065.1.g00090.1.sm.mkhc:exon:6
Zjn_sc00065.1 maker exon 56583 56656 . - . ID=Zjn_sc00065.1.g00090.1.sm.mkhc:exon:5
Zjn_sc00065.1 maker exon 57583 57631 . - . ID=Zjn_sc00065.1.g00090.1.sm.mkhc:exon:4
Zjn_sc00065.1 maker exon 57791 57958 . - . ID=Zjn_sc00065.1.g00090.1.sm.mkhc:exon:3
Zjn_sc00065.1 maker exon 58092 58116 . - . ID=Zjn_sc00065.1.g00090.1.sm.mkhc:exon:2
Zjn_sc00065.1 maker exon 58551 58558 . - . ID=Zjn_sc00065.1.g00090.1.sm.mkhc:exon:1

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