Z. japonica Nagirizaki
Zjn_sc00064.1.g00720.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT4G15130.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
272 |
45 |
259 |
1e-97 |
111.8 |
61.4 |
71 |
| Subject |
304 |
19 |
259 |
|
| Annot |
| Symbols: ATCCT2, CCT2 | phosphorylcholine cytidylyltransferase2 | chr4:8637793-8639388 FORWARD LENGTH=304 |
| NR |
ref|NP_001150315.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
272 |
1 |
272 |
e-128 |
106.6 |
83.8 |
87.9 |
| Subject |
290 |
1 |
290 |
|
| Annot |
choline-phosphate cytidylyltransferase B [Zea mays] gi|195638320|gb|ACG38628.1| choline-phosphate cytidylyltransferase B [Zea mays] gi|223945777|gb|ACN26972.1| unknown [Zea mays] gi|414867963|tpg|DAA46520.1| TPA: choline-phosphate cytidylyltransferase B [Zea mays] |
| IRGSP |
Os10t0578900-02_chr10_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
272 |
1 |
272 |
e-125 |
106.3 |
81.6 |
86 |
| Subject |
289 |
1 |
289 |
|
| Annot |
|
| Sbicolor |
Sobic.001G282900.1.p|Chr01|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
272 |
1 |
272 |
e-129 |
108.8 |
85.3 |
89 |
| Subject |
296 |
1 |
296 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00064.1.g00720.1.sm.mkhc |
length: 272 aa. |
| IPR004821 |
Cytidyltransferase-like domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Biological Process |
GO:0009058 |
biosynthetic process |
|
|
| HMMPfam |
PF01467 |
CTP_transf_2 |
3.3e-20 |
50-160 |
| HMMTigr |
TIGR00125 |
cyt_tran_rel: |
3.8e-20 |
48-115 |
| IPR014729 |
Rossmann-like alpha/beta/alpha sandwich fold |
| Gene3D |
G3DSA:3.40.50.620 |
no description |
1.2e-35 |
46-149 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
191-212 |
| HMMPanther |
PTHR10739 |
CYTIDYLYLTRANSFERASE |
5.6e-108 |
44-262 |
| HMMPanther |
PTHR10739:SF13 |
CHOLINE-PHOSPHATE |
5.6e-108 |
44-262 |
| superfamily |
SSF52374 |
Nucleotidylyl |
1.4e-23 |
46-249 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 7 | 5469486 | 5472127 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00064.1 |
maker |
exon |
775311 |
775417 |
. |
- |
. |
ID=Zjn_sc00064.1.g00720.1.sm.mkhc:exon:9 |
| Zjn_sc00064.1 |
maker |
exon |
775462 |
775856 |
. |
- |
. |
ID=Zjn_sc00064.1.g00720.1.sm.mkhc:exon:8 |
| Zjn_sc00064.1 |
maker |
exon |
775932 |
776042 |
. |
- |
. |
ID=Zjn_sc00064.1.g00720.1.sm.mkhc:exon:7 |
| Zjn_sc00064.1 |
maker |
exon |
776186 |
776254 |
. |
- |
. |
ID=Zjn_sc00064.1.g00720.1.sm.mkhc:exon:6 |
| Zjn_sc00064.1 |
maker |
exon |
776401 |
776475 |
. |
- |
. |
ID=Zjn_sc00064.1.g00720.1.sm.mkhc:exon:5 |
| Zjn_sc00064.1 |
maker |
exon |
776639 |
776681 |
. |
- |
. |
ID=Zjn_sc00064.1.g00720.1.sm.mkhc:exon:4 |
| Zjn_sc00064.1 |
maker |
exon |
776771 |
776866 |
. |
- |
. |
ID=Zjn_sc00064.1.g00720.1.sm.mkhc:exon:3 |
| Zjn_sc00064.1 |
maker |
exon |
777496 |
777609 |
. |
- |
. |
ID=Zjn_sc00064.1.g00720.1.sm.mkhc:exon:2 |
| Zjn_sc00064.1 |
maker |
exon |
777738 |
777952 |
. |
- |
. |
ID=Zjn_sc00064.1.g00720.1.sm.mkhc:exon:1 |