Z. japonica Nagirizaki
Zjn_sc00064.1.g00570.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G35500.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 358 71 353 4e-99 108.1 49.4 63.4
Subject 387 100 382
Annot | Symbols: SKL2 | shikimate kinase like 2 | chr2:14914038-14915909 FORWARD LENGTH=387
NR ref|XP_004983537.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 358 1 356 e-166 106.4 85.2 92.2
Subject 381 7 381
Annot PREDICTED: probable inactive shikimate kinase like 2, chloroplastic [Setaria italica]
IRGSP Os10t0577700-01_chr10_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 358 27 356 e-160 104.7 78.2 83.8
Subject 375 45 375
Annot
Sbicolor Sobic.001G284200.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 358 4 356 e-157 108.1 82.7 89.1
Subject 387 16 387
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00064.1.g00570.1.sm.mkhc length: 358 aa.
IPR000623 Shikimate kinase/Threonine synthase-like 1
method AccNumber shortName E-value location
HMMPfam PF01202 SKI 4.2e-06 172-262
IPR007052 CS domain
ProfileScan PS51203 CS 10.771 50-140
IPR008978 HSP20-like chaperone
superfamily SSF49764 HSP20-like 4.3e-08 73-145
no_ID  
Gene3D G3DSA:2.60.40.790 no description 5e-07 73-143
Gene3D G3DSA:3.40.50.300 no description 4.2e-05 172-262
HMMPanther PTHR21087 SHIKIMATE 3.3e-52 59-358
Seg seg seg NA 17-43
49-64
258-278
Pseudomolecule
Chromosome Start End Strand
756428315645433-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00064.1 maker exon 602005 602192 . + . ID=Zjn_sc00064.1.g00570.1.sm.mkhc:exon:1
Zjn_sc00064.1 maker exon 602764 602922 . + . ID=Zjn_sc00064.1.g00570.1.sm.mkhc:exon:2
Zjn_sc00064.1 maker exon 602993 603187 . + . ID=Zjn_sc00064.1.g00570.1.sm.mkhc:exon:3
Zjn_sc00064.1 maker exon 603369 603430 . + . ID=Zjn_sc00064.1.g00570.1.sm.mkhc:exon:4
Zjn_sc00064.1 maker exon 603559 603625 . + . ID=Zjn_sc00064.1.g00570.1.sm.mkhc:exon:5
Zjn_sc00064.1 maker exon 603747 603865 . + . ID=Zjn_sc00064.1.g00570.1.sm.mkhc:exon:6
Zjn_sc00064.1 maker exon 603964 604140 . + . ID=Zjn_sc00064.1.g00570.1.sm.mkhc:exon:7
Zjn_sc00064.1 maker exon 604498 604607 . + . ID=Zjn_sc00064.1.g00570.1.sm.mkhc:exon:8

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