Z. japonica Nagirizaki
Zjn_sc00063.1.g01460.1.sm.mk
Sequence
-
BLAST
| TAIR10 |
AT4G15130.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
326 |
46 |
312 |
e-109 |
93.3 |
57.7 |
65 |
| Subject |
304 |
19 |
256 |
|
| Annot |
| Symbols: ATCCT2, CCT2 | phosphorylcholine cytidylyltransferase2 | chr4:8637793-8639388 FORWARD LENGTH=304 |
| NR |
gb|AFW61144.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
326 |
31 |
326 |
e-149 |
95.7 |
78.8 |
83.4 |
| Subject |
312 |
16 |
312 |
|
| Annot |
hypothetical protein ZEAMMB73_802601 [Zea mays] |
| IRGSP |
Os08t0161800-02_chr08_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
326 |
1 |
326 |
e-138 |
86.2 |
74.8 |
79.1 |
| Subject |
281 |
1 |
281 |
|
| Annot |
|
| Sbicolor |
Sobic.007G051200.1.p|Chr07|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
326 |
1 |
326 |
e-146 |
95.7 |
81 |
83.7 |
| Subject |
312 |
1 |
312 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00063.1.g01460.1.sm.mk |
length: 326 aa. |
| IPR004821 |
Cytidyltransferase-like domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Biological Process |
GO:0009058 |
biosynthetic process |
|
|
| HMMPfam |
PF01467 |
CTP_transf_2 |
1.5e-22 |
51-180 |
| HMMTigr |
TIGR00125 |
cyt_tran_rel: |
8.7e-20 |
49-116 |
| IPR014729 |
Rossmann-like alpha/beta/alpha sandwich fold |
| Gene3D |
G3DSA:3.40.50.620 |
no description |
2.9e-38 |
49-184 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
219-240 |
| HMMPanther |
PTHR10739 |
CYTIDYLYLTRANSFERASE |
3.6e-133 |
46-326 |
| HMMPanther |
PTHR10739:SF13 |
CHOLINE-PHOSPHATE |
3.6e-133 |
46-326 |
| superfamily |
SSF52374 |
Nucleotidylyl |
1.3e-27 |
47-182 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 13 | 1377314 | 1379064 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00063.1 |
maker_non_over |
exon |
798723 |
798940 |
. |
+ |
. |
ID=Zjn_sc00063.1.g01460.1.sm.mk:exon:1 |
| Zjn_sc00063.1 |
maker_non_over |
exon |
799252 |
799365 |
. |
+ |
. |
ID=Zjn_sc00063.1.g01460.1.sm.mk:exon:2 |
| Zjn_sc00063.1 |
maker_non_over |
exon |
799462 |
799557 |
. |
+ |
. |
ID=Zjn_sc00063.1.g01460.1.sm.mk:exon:3 |
| Zjn_sc00063.1 |
maker_non_over |
exon |
799646 |
799688 |
. |
+ |
. |
ID=Zjn_sc00063.1.g01460.1.sm.mk:exon:4 |
| Zjn_sc00063.1 |
maker_non_over |
exon |
799786 |
799941 |
. |
+ |
. |
ID=Zjn_sc00063.1.g01460.1.sm.mk:exon:5 |
| Zjn_sc00063.1 |
maker_non_over |
exon |
800032 |
800295 |
. |
+ |
. |
ID=Zjn_sc00063.1.g01460.1.sm.mk:exon:6 |
| Zjn_sc00063.1 |
maker_non_over |
exon |
800384 |
800473 |
. |
+ |
. |
ID=Zjn_sc00063.1.g01460.1.sm.mk:exon:7 |