Z. japonica Nagirizaki
Zjn_sc00062.1.g00770.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 No_hits
NR ref|XP_004955928.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 484 222 483 1e-64 83.1 29.3 36.8
Subject 402 5 280
Annot PREDICTED: F-box/kelch-repeat protein At3g23880-like [Setaria italica]
IRGSP Os07t0242600-01_chr07_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 484 219 480 8e-61 82 26.7 35.5
Subject 397 1 277
Annot
Sbicolor Sobic.002G098700.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 484 223 479 1e-60 58.3 27.3 33.7
Subject 282 6 272
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00062.1.g00770.1.am.mkhc length: 484 aa.
IPR001810 F-box domain
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00646 F-box 2.8e-07 241-278
HMMSmart SM00256 A 5.8e-06 243-283
ProfileScan PS50181 FBOX 8.623 237-282
superfamily SSF81383 F-box 5.9e-14 230-296
no_ID  
Gene3D G3DSA:1.20.1280.50 no description 6.6e-09 237-279
Seg seg seg NA 3-22
78-92
192-201
425-434
Pseudomolecule
No data.
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00062.1 maker exon 791974 792860 . - . ID=Zjn_sc00062.1.g00770.1.am.mkhc:exon:5
Zjn_sc00062.1 maker exon 794707 794806 . - . ID=Zjn_sc00062.1.g00770.1.am.mkhc:exon:4
Zjn_sc00062.1 maker exon 794883 794926 . - . ID=Zjn_sc00062.1.g00770.1.am.mkhc:exon:3
Zjn_sc00062.1 maker exon 795025 795417 . - . ID=Zjn_sc00062.1.g00770.1.am.mkhc:exon:2
Zjn_sc00062.1 maker exon 797258 797285 . - . ID=Zjn_sc00062.1.g00770.1.am.mkhc:exon:1

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