Z. japonica Nagirizaki
Zjn_sc00061.1.g01050.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT4G13930.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
470 |
1 |
470 |
0.0 |
100.2 |
85.7 |
93.6 |
| Subject |
471 |
1 |
470 |
|
| Annot |
| Symbols: SHM4 | serine hydroxymethyltransferase 4 | chr4:8048013-8050021 REVERSE LENGTH=471 |
| NR |
ref|XP_004979238.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
470 |
1 |
470 |
0.0 |
100.2 |
96.2 |
98.7 |
| Subject |
471 |
1 |
470 |
|
| Annot |
PREDICTED: serine hydroxymethyltransferase 4 [Setaria italica] |
| IRGSP |
Os11t0455800-01_chr11_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
470 |
1 |
470 |
0.0 |
100.2 |
95.5 |
98.3 |
| Subject |
471 |
1 |
470 |
|
| Annot |
|
| Sbicolor |
Sobic.005G113300.1.p|Chr05|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
470 |
1 |
470 |
0.0 |
100.2 |
95.1 |
98.3 |
| Subject |
471 |
1 |
470 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00061.1.g01050.1.sm.mkhc |
length: 470 aa. |
| IPR001085 |
Serine hydroxymethyltransferase |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0004372 |
glycine hydroxymethyltransferase activity |
|
|
| Biological Process |
GO:0006544 |
glycine metabolic process |
|
|
| Biological Process |
GO:0006563 |
L-serine metabolic process |
|
|
| HAMAP |
MF_00051 |
SHMT |
41.904 |
11-461 |
| HMMPIR |
PIRSF000412 |
Serine/glycine |
1.7e-236 |
1-466 |
| HMMPanther |
PTHR11680 |
SERINE |
2.2e-304 |
1-470 |
| HMMPfam |
PF00464 |
SHMT |
2e-183 |
12-412 |
| IPR015421 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| Gene3D |
G3DSA:3.40.640.10 |
no description |
1.5e-96 |
41-312 |
| IPR015422 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 2 |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| Gene3D |
G3DSA:3.90.1150.10 |
no description |
1.3e-60 |
313-462 |
| IPR015424 |
Pyridoxal phosphate-dependent transferase |
| superfamily |
SSF53383 |
PLP-dependent |
2.4e-173 |
9-465 |
| IPR019798 |
Serine hydroxymethyltransferase, pyridoxal phosphate binding site |
| Molecular Function |
GO:0004372 |
glycine hydroxymethyltransferase activity |
|
|
| Biological Process |
GO:0006544 |
glycine metabolic process |
|
|
| Biological Process |
GO:0006563 |
L-serine metabolic process |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| PatternScan |
PS00096 |
SHMT |
NA |
236-252 |
| no_ID |
|
| HMMPanther |
PTHR11680:SF0 |
SUBFAMILY |
2.2e-304 |
1-470 |
| Seg |
seg |
seg |
NA |
258-268 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 10 | 3358124 | 3362698 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00061.1 |
maker |
exon |
1101033 |
1102190 |
. |
- |
. |
ID=Zjn_sc00061.1.g01050.1.sm.mkhc:exon:4 |
| Zjn_sc00061.1 |
maker |
exon |
1102914 |
1103015 |
. |
- |
. |
ID=Zjn_sc00061.1.g01050.1.sm.mkhc:exon:3 |
| Zjn_sc00061.1 |
maker |
exon |
1103098 |
1103488 |
. |
- |
. |
ID=Zjn_sc00061.1.g01050.1.sm.mkhc:exon:2 |
| Zjn_sc00061.1 |
maker |
exon |
1104930 |
1105607 |
. |
- |
. |
ID=Zjn_sc00061.1.g01050.1.sm.mkhc:exon:1 |